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Report for CCDS53788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53788.1 Public Homo sapiens 12 ZNF641 24 110 108 CCDS HistoryNCBI Gene:121274Re-query CCDS DB by CCDS ID:53788.1Re-query CCDS DB by GeneID:121274See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53788.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000547026.6 ENSP00000449974.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000547026.6Link to Ensembl Protein Viewer:ENSP00000449974.1Re-query CCDS DB by Nucleotide ID:ENST00000547026Re-query CCDS DB by Protein ID:ENSP00000449974
Original member Current member NCBI NM_001172681.2 NP_001166152.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172681.2Link to Protein Sequence:NP_001166152.1Re-query CCDS DB by Nucleotide ID:NM_001172681Re-query CCDS DB by Protein ID:NP_001166152Link to BLAST:NP_001166152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166152.1 424 Q96N77-4 424 100% 0 0

Chromosomal Locations for CCDS 53788.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 48342973 48343727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48344599 48344712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48345345 48345474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48347252 48347343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48347907 48348090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGCTTTCAGAACAGACAGCAGCGCTGGGGACAGGATGGGAATCAATGAATGTACAGCTGGATGGAGCAG
AG
CCCCAGGTGGAAAGGGGAAGCCAGGAAGAGCGGCCATGGAGAACAGTACCAGGACCTCTGGAGCACCT
G
TGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGGCTCAGTCTGCTCCCTGGGTTCCTGCA
ATT
CCCCAGGAGGGGAACACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCTGGATCACAGGGCC
TG
GTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCTCAGAC
A
GACTTTTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTAGTCTCTCTGAGATTTCCAATTCCC
AAA
CTGGACATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCAGGACTTAGAGG
AG
AGGGACATTCTGAGGGTCACATATACAGGAGATGGAAGTGAACATGAGGGGGATACCCCTGAACTAGA
A
GCAGAACCTCCCAGAATGTTATCCAGCGTGTCTGAAGATACTGTTCTCTGGAACCCGGAGCATGATGAG
AGC
TGGGATTCCATGCCCAGCAGCTCCAGAGGAATGCTCCTGGGGCCCCCTTTTCTTCAGGAAGATAGTT
TC
TCAAACCTGCTGTGTAGCACAGAGATGGATTCCCTGTTAAGACCCCACACATGCCCCCAGTGTGGGAA
A
CAGTTTGTATGGGGTTCCCACCTTGCCAGGCATCAACAAACACACACTGGGGAGAGACCCTACAGCTGC
CTC
AAGTGTGAGAAGACCTTTGGGCGAAGACATCACCTCATCAGGCACCAGAAAACCCACCTACATGACA
AG
ACCAGCAGGTGCTCTGAGTGTGGTAAGAATTTCCGATGCAACTCCCATCTGGCCAGCCACCAGAGAGT
G
CATGCAGAAGGCAAATCCTGCAAAGGCCAAGAGGTTGGAGAGAGCCCTGGCACAAGGAAACGGCAGCGT
GCC
CCACCAGTGCCAAAGTGTCACGTGTGCACTGAATGTGGGAAGAGCTTTGGCCGAAGGCACCACCTTG
TG
AGACACTGGCTGACCCACACTGGGGAGAAGCCCTTCCAGTGCCCTCGCTGTGAGAAGAGCTTTGGCCG
A
AAACATCACCTGGACAGGCACCTGCTCACCCACCAGGGACAAAGTCCCCGGAACAGCTGGGACAGAGGA
ACA
TCTGTCTTTTGA


Translation (424 aa):
MLSEQTAALGTGWESMNVQLDGAEPQVERGSQEERPWRTVPGPLEHLCCDLEEEPQSLQEKAQSAPWVPA
I
PQEGNTGDWEMAAALLAAGSQ
GLVTIKDVSLCFSQEEWRSLDPSQTDFYGEYVMQENCGIVVSLRFPIP
K
LDMLSQLEGGEEQWVPDPQDLEERDILRVTYT
GDGSEHEGDTPELEAEPPRMLSSVSEDTVLWNPEHDE
S
WDSMPSSSRGMLLGPPFLQEDSFSNLLCSTEMDSLLRPHTCPQCGKQFVWGSHLARHQQTHTGERPYSC
L
KCEKTFGRRHHLIRHQKTHLHDKTSRCSECGKNFRCNSHLASHQRVHAEGKSCKGQEVGESPGTRKRQR
A
PPVPKCHVCTECGKSFGRRHHLVRHWLTHTGEKPFQCPRCEKSFGRKHHLDRHLLTHQGQSPRNSWDRG
T
SVF




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 Genome Browser Links:   Ensembl Genome Browser
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