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Report for CCDS53334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53334.1 Public Homo sapiens 1 TYW3 24 110 108 CCDS HistoryNCBI Gene:127253Re-query CCDS DB by CCDS ID:53334.1Re-query CCDS DB by GeneID:127253See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53334.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457880.6 ENSP00000407025.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457880.6Link to Ensembl Protein Viewer:ENSP00000407025.2Re-query CCDS DB by Nucleotide ID:ENST00000457880Re-query CCDS DB by Protein ID:ENSP00000407025
Original member Current member NCBI NM_001162916.2 NP_001156388.1 Accepted alive Link to Nucleotide Sequence:NM_001162916.2Link to Protein Sequence:NP_001156388.1Re-query CCDS DB by Nucleotide ID:NM_001162916Re-query CCDS DB by Protein ID:NP_001156388Link to BLAST:NP_001156388.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156388.1 226 Q6IPR3-2 226 100% 0 0

Chromosomal Locations for CCDS 53334.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74733245 74733418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74736542 74736622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74748751 74748822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74752292 74752425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74763894 74764113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGATCGCAGCGCGGAGTTCAGGAAATGGAAGGCGCAATGTTTGAGCAAAGCGGACCTCAGCCGGAAGG
GCAGTGTTGACGAGGATGTGGTAGAGCTTGTGCAGTTTCTGAACATGCGAGATCAGTTTTTCACCACCAG
CTCCTGCGCTGGCCGCATCCTACTCCTTGACCGGGGTATAAATGGTTTTGAGGTTCAGAAACAAAACTGT
TGCTGGCTACTGGTTACACACAAACTTTGTGTAAAAGATGATGTGCATTCCATGGCAATAGATTCTGGTT
TCAGGAACTCTGGCATAACGGTGGGAAAGAGAGGAAAAACTATGTTGGCTGTCCGGAGTACACATGGCTT
AGAAGTTCCATTAAGCCATAAGGGAAAACTGATGGTGACAGAGGAATATATTGACTTCCTGTTAAATGTG
GCAAATCAAAAAATGGAGGAAAACAAGAAAAGAATTGAGAGGTTTTACAACTGCCTACAGCATGCTTTGG
AAAGGGAAACGATGACTAACTTACATCCCAAGATCAAAGAGAAAAATAACTCATCATATATTCATAAGAA
AAAAAGAAACCCAGAAAAAACACGTGCCCAGTGTATTACTAAAGAAAGTGATGAAGAACTTGAAAATGAT
GATGATGATGATCTAGGAATCAATGTTACCATCTTCCCTGAAGATTACTAA

Translation (226 aa):
MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGINGFEVQKQNC
CWLLVTHKLCVKDDVHSMAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNV
ANQKMEENKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEELEND
DDDDLGINVTIFPEDY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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