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Report for CCDS52829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52829.1 Public Mus musculus 9 Skor1 23 108 98 CCDS HistoryNCBI Gene:207667Re-query CCDS DB by CCDS ID:52829.1Re-query CCDS DB by GeneID:207667See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52829.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119146.7 ENSMUSP00000113924.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119146.7Link to Ensembl Protein Viewer:ENSMUSP00000113924.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119146Re-query CCDS DB by Protein ID:ENSMUSP00000113924
Original member Current member NCBI NM_001163755.1 NP_001157227.1 Accepted alive Link to Nucleotide Sequence:NM_001163755.1Link to Protein Sequence:NP_001157227.1Re-query CCDS DB by Nucleotide ID:NM_001163755Re-query CCDS DB by Protein ID:NP_001157227Link to BLAST:NP_001157227.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157227.1 936 Q8BX46-2 936 100% 0 0

Chromosomal Locations for CCDS 52829.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 63138871 63138965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63139498 63139563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63140054 63140128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63140357 63140431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63141714 63141785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63142244 63142354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63143300 63143396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63144382 63146578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63146891 63146913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2811 nt):
ATGGCATTGCTGTGTGGCCTTGGGAGCGGCGGCATGGAGGCTCTCACCACTCAGCTGGGGCCGGGACGCG
AGGGCAGCTCCTCTCCCAACTCCAAGCAAGAGCTGCAGCCCTACTCGGGATCCAGCGCCCTTAAACCCAA
CCAGGTGGGCGAGACGTCGCTGTACGGGGTACCCATCGTGTCGCTGGTCATTGATGGGCAGGAGCGCCTG
TGCCTAGCCCAGATCTCCAACACCCTGCTCAAAAACTACAGCTACAATGAGATCCACAACCGCCGCGTGG
CCCTGGGCATCACATGCGTGCAATGCACGCCGGTGCAGCTGGAGATACTGCGTCGGGCCGGGGCCATGCC
CATCTCCTCTCGCCGCTGTGGTATGATCACAAAACGAGAGGCCGAACGCCTGTGCAAGTCGTTCCTGGGC
GAGCACAAGCCCCCCAAACTGCCTGAGAACTTCGCCTTTGACGTGGTGCACGAGTGCGCATGGGGCTCTC
GGGGCAGCTTCATCCCTGCCCGTTACAACAGCTCTCGTGCTAAGTGCATCAAGTGCGGCTACTGCAGTAT
GTATTTCTCTCCCAACAAGTTCATCTTCCATTCGCACCGCACACCCGACGCCAAGTACACTCAGCCCGAC
GCCGCCAACTTTAACTCGTGGCGTCGGCACCTCAAACTCAGTGACAAGTCGGCCACCGACGAACTGAGCC
ACGCTTGGGAGGACGTCAAGGCTATGTTTAATGGCGGTACGCGCAAGCGGACCTTCTCCCTGCAAGGGGG
CGGCGGAGGCGGCGCTAATAGCGGGTCTGGTGGTGCAGGGAAGGGCGGCGCTGGTGGCGGTGGCGGTCCA
GGGTGCGGCTCAGAGATGGCCCCAGGCCCACCGCCCCACAAAAGTCTGCGCTGCGGTGAAGACGAGGCGG
CTGGGCCTCCCGGGCCACCTCCACCGCATCCGCAGCGCGCACTTGGCCTGGCGGCGGCAGCTAGTGGCCC
TGCAGGACCTGGAGGACCTGGGGGCAGCGCAGGGGTTCGCAGCTACCCGGTGATTCCAGTGCCCAGCAAA
GGTTTTGGCCTCTTGCAAAAGCTGCCCCCGCCTCTTTTCCCGCATCCTTACGGTTTCCCCACAGCATTCG
GCCTATGTCCCAAAAAGGACGACCCAGTGTTGGTCGCCGGAGAACCCAAGGGAGGCCCTGGCACCGGGAG
CAGTGGGGGCGCTGGCACCGCCGCGGGTGCGGGTGGCCCGGGAGCTGGCCACTTGCCCCCAGGAGCAGGG
CCCGGCCCTGGTGGCGGCACAATGTTCTGGGGACATCAACCTTCCGGCGCAGCCAAGGACGCAGCGGCGG
TAGCTGCCGCAGCTGCCGCCGCCACTGTATACCCGACGTTTCCCATGTTCTGGCCAGCAGCCGGGAGCCT
CCCGGTGCCTCCTTACCCGGCCGCTCAGAGCCAAGCTAAGGCCGTAGCGGCCGCGGTGGCTGCGGCTGCT
GCTGCAGCGGCGGCGGCGGCTGGCGGGGGCGGTCCTGAGTCTTTGGACGGTGCCGAGCCAGCTAAAGAGG
GCAGCCTCGGTACGGAGGAGCGCTGCCCGAGCGCTCTATCCCGCGGGCCCCTGGACGAGGACGGTGCGGA
CGAGGCGCTGCCACCGTCTCTGGGTCCCCTGCCCCCTCCGCCACCGCCACCTGCTCGCAAAAGCTCCTAC
GTGTCAGCCTTCCGACCCGTAGTTAAGGATGCAGAGAGCATCGCTAAGCTCTACGGCAGCGCGCGCGAGG
CCTATGGCTCCGGACCTGCTCGCGGGCCAGTGCCCGGCACCGGGACCGGAGGGGGCTACGTGAGCCCGGA
CTTTCTGAGCGAGGGCAGCTCCAGCTATCATTCTGCCTCGCCCGACGTGGACACCGCGGACGAACCGGAG
GTGGACGTAGAGTCCAACCGCTTCCCCGACGAGGAGGGAGCCCAGGACGACACCGAGCCCAGGGCACCCA
GCACGGGAGGTGGCCCAGACGGCGACCAGCCTGCTGGGCCCCCATCTGTTACATCCTCAGGCGCCGACGG
CCCCACAGACTCTGCGGATGGCGATAGTCCTCGCCCTCGCCGCCGCCTTGGGCCACCGCCCGCTATCAGA
TCCGCATTCGGGGACCTGGTGGCCGATGATGTGGTGCGGAGAACTGAGCGGAGTCCACCAAGCGGCGGCT
ATGAGCTGCGAGAGCCTTGCGGGCCCCTGGGAGGCCCCGGGGCGGCCAAGGTGTATGCGCCTGAAAGGGA
CGAACACGTGAAGAGTACGGCGGTGGCGGCGGCGCTGGGGCCCGCGGCCTCTTACCTCTGCACCCCAGAG
ACCCACGAGCCGGATAAGGAAGACAATCACTCGACGACAGCCGACGACTTGGAAACCAGAAAATCCTTTT
CAGACCAAAGGAGTGTCTCCCAGCCAAGCCCTGCAAATACAGATCGAGGTGAGGATGGGCTCACTTTGGA
TGTCACAGGAACTCAACTGGTGGAGAAAGATATCGAGAACCTGGCCAGAGAAGAATTGCAGAAATTGCTT
CTGGAGCAAATGGAGCTTCGGAAGAAGCTGGAGCGGGAATTCCAGAGTCTCAAAGATAATTTTCAGGATC
AAATGAAGAGGGAATTGGCTTATCGGGAAGAAATGGTGCAACAGCTGCAAATTGTCAGAGATACCTTGTG
TAACGAACTGGACCAGGAGAGGAAGGCCCGCTATGCCATCCAGCAGAAATTAAAAGAAGCTCACGACGCC
CTGCACCACTTCTCCTGCAAGATGCTGACACCCCGGCACTGCACCGGCAACTGCTCCTTCAAGCCTCCGC
TGCTGCCCTAG

Translation (936 aa):
MALLCGLGSGGMEALTTQLGPGREGSSSPNSKQELQPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERL
CLAQISNTLLKNYSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLG
EHKPPKLPENFAFDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPD
AANFNSWRRHLKLSDKSATDELSHAWEDVKAMFNGGTRKRTFSLQGGGGGGANSGSGGAGKGGAGGGGGP
GCGSEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRALGLAAAASGPAGPGGPGGSAGVRSYPVIPVPSK
GFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLVAGEPKGGPGTGSSGGAGTAAGAGGPGAGHLPPGAG
PGPGGGTMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPPYPAAQSQAKAVAAAVAAAA
AAAAAAAGGGGPESLDGAEPAKEGSLGTEERCPSALSRGPLDEDGADEALPPSLGPLPPPPPPPARKSSY
VSAFRPVVKDAESIAKLYGSAREAYGSGPARGPVPGTGTGGGYVSPDFLSEGSSSYHSASPDVDTADEPE
VDVESNRFPDEEGAQDDTEPRAPSTGGGPDGDQPAGPPSVTSSGADGPTDSADGDSPRPRRRLGPPPAIR
SAFGDLVADDVVRRTERSPPSGGYELREPCGPLGGPGAAKVYAPERDEHVKSTAVAAALGPAASYLCTPE
THEPDKEDNHSTTADDLETRKSFSDQRSVSQPSPANTDRGEDGLTLDVTGTQLVEKDIENLAREELQKLL
LEQMELRKKLEREFQSLKDNFQDQMKRELAYREEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDA
LHHFSCKMLTPRHCTGNCSFKPPLLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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