NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49950.1 Public Mus musculus 17 Wtap 23 108 98 CCDS HistoryNCBI Gene:60532Re-query CCDS DB by CCDS ID:49950.1Re-query CCDS DB by GeneID:60532See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007007.13 ENSMUSP00000007007.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007007.13Link to Ensembl Protein Viewer:ENSMUSP00000007007.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000007007Re-query CCDS DB by Protein ID:ENSMUSP00000007007
Original member Current member EBI ENSMUST00000159551.7 ENSMUSP00000124205.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159551.7Link to Ensembl Protein Viewer:ENSMUSP00000124205.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159551Re-query CCDS DB by Protein ID:ENSMUSP00000124205
Original member Current member NCBI NM_001113533.1 NP_001107005.1 Accepted alive Link to Nucleotide Sequence:NM_001113533.1Link to Protein Sequence:NP_001107005.1Re-query CCDS DB by Nucleotide ID:NM_001113533Re-query CCDS DB by Protein ID:NP_001107005Link to BLAST:NP_001107005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107005.1 396 Q9ER69-1 396 99.7475% 0 1

Chromosomal Locations for CCDS 49950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12967468 12968051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12969405 12969559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12975296 12975474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12980822 12980949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12981750 12981808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12983457 12983512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12985916 12985945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGACCAACGAAGAACCTCTTCCTAAAAAGGTCCGACTGAGTGAAACAGACTTCAAAGTTATGGCACGGG
ATGAGTTAATTCTAAGATGGAAACAATATGAAGCATATGTTCAAGCTTTGGAGGGAAAGTACACAGATCT
TAATTCAAACGATGTGACTGGTTTAAGGGAATCTGAAGAAAAACTAAAGCAGCAACAGCAGGAGTCTGCA
CGCAGGGAGAACATTCTTGTCATGCGGCTAGCAACCAAAGAGCAGGAGATGCAAGAGTGCACCACTCAAA
TCCAGTACCTCAAGCAAGTTCAGCAGCCGAGTGTGGCCCAACTGAGATCAACAATGGTAGACCCAGCAAT
CAACTTGTTTTTCCTAAAAATGAAAGGTGAACTGGAACAGACTAAAGACAAACTGGAACAAGCCCAAAAT
GAACTGAGTGCCTGGAAGTTTACGCCTGATAGCCAAACAGGCAAAAAGCTAATGGCGAAGTGTCGAATGC
TTATCCAGGAGAACCAAGAGCTTGGAAGGCAGCTGTCCCAGGGCCGTATTGCACAGCTTGAAGCAGAATT
GGCTTTACAGAAGAAATATAGTGAGGAGCTTAAAAGCAGTCAGGATGAACTGAATGACTTCATCATTCAA
CTTGATGAAGAAGTAGAGGGTATGCAGAGCACCATTCTAGTTCTTCAGCAACAATTGAAGGAGACACGAC
AGCAGTTGGCACAGTACCAGCAGCAGCAGTCTCAAGCTTCAGCTCCAAGTACCAGCAGGACTACATCTTC
TGAACCTGTAGATCAGGCAGAGGTCACAAGCAAAGACTGCAGTCGTCTGGCAAATGGACCAAGTAATGGC
AGCTCCTCCCGCCAGAGGACGTCTGGGTCTGGATTTCACAGGGAGGGGAGCACACCTGAGGATGACTTTC
CTTCTTCTTCAGGGAATGGTAATAAGGCCTCCAACAGCTCAGAGGAGAGAACTGGCAGAGGAGGTAGTAG
TTACATAAACCCACTCAGTGCGGGGTATGAAAGTGTAGACTCTCCCACGGGCAGTGAAAACTCTCTCACA
CATCACTCAAATGACACAGACTCCAGTCATGACCCTCAAGAGGAGAAAGCAGTGAGTGGGAAAGGTAATC
GAACTGTGGGTTCCCGCCATGTTCAGAATGGCTTGGACTCAAATGTAAATGTACAGGGTGCAGTTTTGTA
A

Translation (396 aa):
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQQQQESA
RRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN
ELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ
LDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQSQASAPSTSRTTSSEPVDQAEVTSKDCSRLANGPSNG
SSSRQRTSGSGFHREGSTPEDDFPSSSGNGNKASNSSEERTGRGGSSYINPLSAGYESVDSPTGSENSLT
HHSNDTDSSHDPQEEKAVSGKGNRTVGSRHVQNGLDSNVNVQGAVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH