NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4857.1 Public Homo sapiens 6 MDFI 24 110 108 CCDS HistoryNCBI Gene:4188Re-query CCDS DB by CCDS ID:4857.1Re-query CCDS DB by GeneID:4188See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4857.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230321.11 ENSP00000230321.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230321.11Link to Ensembl Protein Viewer:ENSP00000230321.6Re-query CCDS DB by Nucleotide ID:ENST00000230321Re-query CCDS DB by Protein ID:ENSP00000230321
Original member Current member EBI ENST00000373051.6 ENSP00000362142.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373051.6Link to Ensembl Protein Viewer:ENSP00000362142.2Re-query CCDS DB by Nucleotide ID:ENST00000373051Re-query CCDS DB by Protein ID:ENSP00000362142
Original member Current member NCBI NM_001300804.2 NP_001287733.1 Accepted alive Link to Nucleotide Sequence:NM_001300804.2Link to Protein Sequence:NP_001287733.1Re-query CCDS DB by Nucleotide ID:NM_001300804Re-query CCDS DB by Protein ID:NP_001287733Link to BLAST:NP_001287733.1
Original member Current member NCBI NM_001300806.2 NP_001287735.1 Accepted alive Link to Nucleotide Sequence:NM_001300806.2Link to Protein Sequence:NP_001287735.1Re-query CCDS DB by Nucleotide ID:NM_001300806Re-query CCDS DB by Protein ID:NP_001287735Link to BLAST:NP_001287735.1
Original member Current member NCBI NM_005586.4 NP_005577.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005586.4Link to Protein Sequence:NP_005577.1Re-query CCDS DB by Nucleotide ID:NM_005586Re-query CCDS DB by Protein ID:NP_005577Link to BLAST:NP_005577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287733.1 246 Q99750 246 100% 0 0
NP_001287735.1 246 Q99750 246 100% 0 0
NP_005577.1 246 Q99750 246 100% 0 0

Chromosomal Locations for CCDS 4857.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41638750 41638825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41646126 41646308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41649619 41649843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41653319 41653575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGTACCAGGTGAGCGGCCAGCGCCCCTCTGGCTGCGACGCGCCCTATGGAGCCCCCAGCGCAGCCCCGG
GC
CCAGCCCAGACCCTATCCCTCCTTCCTGGGCTGGAGGTAGTAACAGGATCCACTCACCCTGCGGAGGC
A
GCACCAGAGGAGGGCTCCCTGGAGGAGGCGGCAACCCCCATGCCCCAAGGCAATGGCCCTGGCATCCCC
CAG
GGCCTGGACAGCACTGACCTCGACGTCCCCACAGAAGCTGTGACATGCCAGCCTCAGGGGAACCCCT
TG
GGCTGCACCCCACTTCTGCCGAATGACTCTGGCCACCCCTCAGAGCTGGGCGGCACCAGACGGGCGGG
G
AATGGTGCCCTGGGTGGCCCCAAGGCCCACCGGAAGTTGCAGACACACCCATCTCTCGCCAGCCAGGGC
AGC
AAGAAGAGTAAGAGCAGCAGCAAATCCACCACCTCCCAGATCCCCCTCCAGGCACAGGAAGACTGCT
GT
GTCCACTGCATCCTGTCCTGCCTGTTCTGCGAGTTCCTGACGCTGTGCAACATCGTCCTGGACTGCGC
C
ACCTGTGGCTCCTGCAGCTCGGAGGACTCGTGCCTCTGCTGCTGCTGCTGTGGCTCTGGCGAGTGTGCC
GAC
TGCGACCTGCCCTGCGACCTGGACTGCGGCATCCTGGATGCCTGCTGCGAGTCCGCGGACTGCCTGG
AG
ATCTGCATGGAGTGCTGTGGGCTCTGCTTCTCCTCCTGA


Translation (246 aa):
MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATPMPQGNGPGIP
Q
GLDSTDLDVPTEAVT
CQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGALGGPKAHRKLQTHPSLASQG
S
KKSKSSSKSTTSQIPLQAQE
DCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECA
D
CDLPCDLDCGILDACCESADCLEICMECCGLCFSS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser