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Report for CCDS48292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48292.1 Public Mus musculus 1 Speg 23 108 98 CCDS HistoryNCBI Gene:11790Re-query CCDS DB by CCDS ID:48292.1Re-query CCDS DB by GeneID:11790See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113590.7 ENSMUSP00000109220.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113590.7Link to Ensembl Protein Viewer:ENSMUSP00000109220.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113590Re-query CCDS DB by Protein ID:ENSMUSP00000109220
Original member NCBI NM_001085371.1 NP_001078840.1 Updated not alive Link to Nucleotide Sequence:NM_001085371.1Link to Protein Sequence:NP_001078840.1Re-query CCDS DB by Nucleotide ID:NM_001085371Re-query CCDS DB by Protein ID:NP_001078840
Current member NCBI NM_001085371.2 NP_001078840.1 Accepted alive Link to Nucleotide Sequence:NM_001085371.2Link to Protein Sequence:NP_001078840.1Re-query CCDS DB by Nucleotide ID:NM_001085371Re-query CCDS DB by Protein ID:NP_001078840Link to BLAST:NP_001078840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078840.1 861 Q62407-2 861 100% 0 0

Chromosomal Locations for CCDS 48292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75382142 75382174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75383137 75383179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75384656 75384745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75384828 75385164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75387798 75389104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75390979 75391122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75391762 75391944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75401055 75401230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75401463 75401551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75402298 75402473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75403777 75403784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGAAGAAGCTGTGGGTGAAGAAGCGTTTCCAGAAAACCGGCCATTCCCGCCGGGCCTTTGGCCGACTTA
CCCATGACTCGGAGACTGCCGAGGATGACATCAGCGATGTGCCGGGGACCCAGCGCCTGGAGCTTCGGGA
TGACAGGGCCTTCAGCACCCCCACGGGGGGCTCTGATACCCTGGTGGGTACCTCCCTGGACACACCCCCG
ACCTCCGTGACAGGCACCTCAGAGGAGCAAGTGAGCTGGTGGGGCAGCGGGCAGACGGTCCTGGAGCAGG
AAGCGGGCAGCGGGGGTGGCACCCGCCCCCTCCCAGGCAGCCCAAGGCAAGCACAGACAACCGGGGCCGG
GCCACGGCACCTGGGGGTGGAGCCGCTGGTGCGGGCATCGCGAGCTAATCTGGTGGGCGCAAGCTGGGGG
TCAGAGGATAGCCTTTCGGTGGCCAGTGACCTCTATGGCAGCGCGTTCAGTCTGTACAGAGGACGGGCGC
TCTCGATCCACGTCAGCATTCCTCCGAGTGGATTGCACAGAGAGGAGCCTGACCTTCAGCCTCAGCCAGC
CAGTGATGCCCTTCGTCCACGCCCTGCCCTTCCACCTCCCTCCAAATCCGCTTTGCTTCCCCCACCATCT
CCTCGGGTGGGAAAGAGGGCTCTGCCAGGACCTAGTACCCAGCCCCCAGCTACTCCCACTTCGCCCCATC
GGCGTGCTCAGGAGCCCTCGCTGCCTGAGGACATCACCACCACGGAAGAGAAGCGAGGGAAAAAGCCCAA
GTCATCCGGGCCGTCGCTGGCGGGCACAGTGGAGTCCCGGCCCCAGACGCCACTGAGCGAGGCTTCGGGT
CGCCTGTCAGCATTGGGCCGCTCGCCCCGGCTGGTGCGCGCGGGGTCCCGCATCCTGGACAAGCTACAGT
TCTTCGAAGAGCGGCGACGCAGCCTGGAGCGCAGCGACTCGCCGCCAGCGCCCCTGCGGCCCTGGGTGCC
CCTGCGCAAGGCTCGCTCGCTGGAGCAGCCGAAGTCCGAGGGCGGTGCGGCGTGGGGCACACCCGAGGCC
TCGCAGGAGGAGCTGCGGTCACCTCGGGGCAGTGTGGCAGAGCGGCGTCGCCTGTTCCAGCAAAAGGCGG
CCTCGTTGGATGAACGCACGCGACAACGCAGTGCAACCTCGGACCTCGAACTCCGCTTCGCCCAGGAGCT
GGGTCGCATCCGCCGATCTACGTCGCGGGAGGAGCTGGTGCGTTCGCACGAGTCCCTGCGTGCCACGCTG
CAGCGCGCCCCATCCCCTCGGGAGCCCGGCGAGCCCCCACTCTTCTCCCGGCCTTCCACACCCAAGACCT
CACGGGCTGTGAGCCCGGCTGCCACCCAGCCGCCGCCTCCTAGTGGTGCGGGCAAATCTGGGGACGAGCC
TGGGAGGCCCCGAAGCAGAGGGCCGGTGGGCAGGACTGAACCGGGGGAAGGCCCGCAGCAGGAGATCAAG
CGTCGGGACCAATTCCCGCTAACCAGGAGCAGAGCCATCCAGGAGTGCAGGAGCCCTGTGCCGCCCTACA
CCGCGGATCCCCCGGAGAGCAGGACAAAAGCCCCCTCCGGTCGCAAGCGGGAACCCCCTGCTCAAGCGGT
GCGCTTTCTGCCCTGGGCCACTCCGGGAGTGGAGGACTCTGTTCTGCCCCAAACCTTGGAGAAGAATAGA
GCGGGACCCGAGGCTGAGAAGAGGCTTCGCAGAGGACCTGAGGAGGATGGCCCCTGGGGGCCCTGGGACC
GCAGAGGGACCCGCAGCCAAGGCAAAGGTCGCCGTGCTCGGCCTACTTCCCCCGAGCTCGAGTCCTCAGA
CGACTCCTATGTGTCCGCTGGGGAAGAGCCCCTGGAGGCACCCGTGTTTGAGATCCCTCTGCAGAATATG
GTGGTGGCGCCAGGAGCTGACGTGCTACTTAAGTGTATCATCACCGCCAACCCCCCACCCCAAGTGTCCT
GGAAAAAGGATGGGTCCATGTTGCACAGCGAGGGTCGTCTTCTCATCCGGGCTGAAGGTGAACGGCACAC
ACTGCTGCTCAGAGAGGCCCAGGCTGCCGATGCTGGGAGCTACACAGCCACTGCCACCAACGAACTGGGC
CAAGCTACCTGTGCTTCTTCACTGGCTGTGAGACCTGGCGGCTCCACATCCCCTTTCAGCAGCCCCATCA
CCTCTGATGAGGAGTACCTGAGCCCCCCAGAGGAGTTCCCAGAGCCTGGGGAGACCTGGCCCCGAACCCC
TACCATGAAGCTCAGTCCCAGCCAGGATCATGATTCCTCCGACTCTTCTTCCAAGGCACCCCCAACGTTC
AAGGTCTCACTCATGGACCAATCGGTGAGAGAAGGTCAAGATGTCATTATGAGCATCCGTGTGCAGGGAG
AGCCCAAGCCTGTGGTTTCCTGGCTGAGGAATCGACAGCCCGTGCGCCCAGACCAGCGGCGCTTTGCAGA
GGAGGCCGAGGGTGGGCTCTGCCGCTTGAGGATCCTGGCTGCTGAACGGGGCGATGCTGGTTTCTACACA
TGCAAGGCGGTCAACGAATATGGCGCTCGGCAGTGCGAGGCCCGCCTGGAGGTCCGAGGCGAGTGA

Translation (861 aa):
MKKLWVKKRFQKTGHSRRAFGRLTHDSETAEDDISDVPGTQRLELRDDRAFSTPTGGSDTLVGTSLDTPP
TSVTGTSEEQVSWWGSGQTVLEQEAGSGGGTRPLPGSPRQAQTTGAGPRHLGVEPLVRASRANLVGASWG
SEDSLSVASDLYGSAFSLYRGRALSIHVSIPPSGLHREEPDLQPQPASDALRPRPALPPPSKSALLPPPS
PRVGKRALPGPSTQPPATPTSPHRRAQEPSLPEDITTTEEKRGKKPKSSGPSLAGTVESRPQTPLSEASG
RLSALGRSPRLVRAGSRILDKLQFFEERRRSLERSDSPPAPLRPWVPLRKARSLEQPKSEGGAAWGTPEA
SQEELRSPRGSVAERRRLFQQKAASLDERTRQRSATSDLELRFAQELGRIRRSTSREELVRSHESLRATL
QRAPSPREPGEPPLFSRPSTPKTSRAVSPAATQPPPPSGAGKSGDEPGRPRSRGPVGRTEPGEGPQQEIK
RRDQFPLTRSRAIQECRSPVPPYTADPPESRTKAPSGRKREPPAQAVRFLPWATPGVEDSVLPQTLEKNR
AGPEAEKRLRRGPEEDGPWGPWDRRGTRSQGKGRRARPTSPELESSDDSYVSAGEEPLEAPVFEIPLQNM
VVAPGADVLLKCIITANPPPQVSWKKDGSMLHSEGRLLIRAEGERHTLLLREAQAADAGSYTATATNELG
QATCASSLAVRPGGSTSPFSSPITSDEEYLSPPEEFPEPGETWPRTPTMKLSPSQDHDSSDSSSKAPPTF
KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYT
CKAVNEYGARQCEARLEVRGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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