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Report for CCDS47562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47562.1 Public Homo sapiens 7 FAM221A 24 110 108 CCDS HistoryNCBI Gene:340277Re-query CCDS DB by CCDS ID:47562.1Re-query CCDS DB by GeneID:340277See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47562.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409994.3 ENSP00000386631.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409994.3Link to Ensembl Protein Viewer:ENSP00000386631.3Re-query CCDS DB by Nucleotide ID:ENST00000409994Re-query CCDS DB by Protein ID:ENSP00000386631
Original member Current member NCBI NM_001127365.3 NP_001120837.1 Accepted alive Link to Nucleotide Sequence:NM_001127365.3Link to Protein Sequence:NP_001120837.1Re-query CCDS DB by Nucleotide ID:NM_001127365Re-query CCDS DB by Protein ID:NP_001120837Link to BLAST:NP_001120837.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120837.1 204 A4D161-3 204 100% 0 0

Chromosomal Locations for CCDS 47562.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23680219 23680283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23689269 23689459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23691390 23691596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23700786 23700868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23702096 23702164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGAGCGGTTGACGTTGCCTCTCGGCGGCGCGGCGGCGGTGGACGAGTACCTGGAGTACCGGAGGTATA
AACAACATAAAACTGACTTGGAAGCGATTCCTCAGCAGTGCCCCATTGATCTGCCCTGCCAAGTGACTGG
CTGCCAGTGCAGGGCTTACCTTTATGTCCCCTTGAATGGTAGCCAGCCCATTCGCTGCAGGTGCAAACAC
TTTGCTGATCAGCACAGTGCTGCGCCTGGCTTTACATGCAATACATGTTCCAAGTGTTCAGGATTCCATA
GCTGCTTCACTTGTGCTTGTGGTCAGCCTGCATATGCCCATGACACAGTAGTGGAAACTAAGCAAGAAAG
ATTGGCTCAGGAAAAACCAGTGGGACAGGACATTCCTTATGCAGCCATGGGAGGATTAACTGGTTTCAGC
TCGCTGGCGGAAGGCTACATGCGGTTAGATGACAGTGGGATTGTAGGTACAAGTAGTCAAGTTTCTTCAT
TAAGGAGACCTGAAGAGGATGATATGGCTTTCTTTGAAAGACGATACCAGGAAAGGATGAAAATGGAAAA
GGCTGCTAAGTGGAAAGGAAAAGCTCCATTGCCATCAGCTACAAAACCTTCATGA

Translation (204 aa):
MERLTLPLGGAAAVDEYLEYRRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQPIRCRCKH
FADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEKPVGQDIPYAAMGGLTGFS
SLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQERMKMEKAAKWKGKAPLPSATKPS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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