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Report for CCDS46955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46955.1 Public Homo sapiens 3 RPL22L1 24 110 108 CCDS HistoryNCBI Gene:200916Re-query CCDS DB by CCDS ID:46955.1Re-query CCDS DB by GeneID:200916See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295830.13 ENSP00000346080.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295830.13Link to Ensembl Protein Viewer:ENSP00000346080.7Re-query CCDS DB by Nucleotide ID:ENST00000295830Re-query CCDS DB by Protein ID:ENSP00000346080
Original member Current member NCBI NM_001099645.2 NP_001093115.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099645.2Link to Protein Sequence:NP_001093115.1Re-query CCDS DB by Nucleotide ID:NM_001099645Re-query CCDS DB by Protein ID:NP_001093115Link to BLAST:NP_001093115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093115.1 122 Q6P5R6 122 100% 0 0

Chromosomal Locations for CCDS 46955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 170866380 170866524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 170868013 170868134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 170868298 170868390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 170870159 170870167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGGCGCCGCAGAAAGACAGGAAGCCCAAGAGGTCAACCTGGAGGTTTAATTTGGACCTTACTCATCCAG
TAGAAGATGGAATTTTTGATTCTGGAAATTTTGAGCAATTTCTACGGGAGAAGGTTAAAGTCAATGGCAA
AACTGGAAATCTCGGGAATGTTGTTCACATTGAACGCTTCAAGAATAAAATCACAGTTGTTTCTGAGAAA
CAGTTCTCTAAAAGGTATTTGAAATACCTTACCAAGAAATACCTTAAGAAGAACAATCTTCGTGATTGGC
TTCGAGTGGTTGCATCTGACAAGGAGACCTACGAACTTCGTTACTTCCAGATTAGTCAAGATGAAGATGA
ATCAGAGTCGGAGGACTAG

Translation (122 aa):
MAPQKDRKPKRSTWRFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEK
QFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDESESED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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