NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45584.1 Public Homo sapiens 17 ZMYND15 24 110 108 CCDS HistoryNCBI Gene:84225Re-query CCDS DB by CCDS ID:45584.1Re-query CCDS DB by GeneID:84225See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 45584.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000433935.6 ENSP00000391742.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000433935.6Link to Ensembl Protein Viewer:ENSP00000391742.1Re-query CCDS DB by Nucleotide ID:ENST00000433935Re-query CCDS DB by Protein ID:ENSP00000391742
Original member Current member NCBI NM_001136046.3 NP_001129518.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136046.3Link to Protein Sequence:NP_001129518.1Re-query CCDS DB by Nucleotide ID:NM_001136046Re-query CCDS DB by Protein ID:NP_001129518Link to BLAST:NP_001129518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129518.1 742 Q9H091-1 742 100% 0 0

Chromosomal Locations for CCDS 45584.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4740549 4741140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4741582 4741816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4741915 4742070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4742331 4742491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4743303 4743455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4743767 4743847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4743991 4744107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4744190 4744278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4744369 4744467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4744625 4744778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4744870 4744928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4745215 4745375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4745819 4745990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2229 nt):
ATGGAGTTTGTGTCTGGATACCGGGATGAGTTCCTTGATTTCACTGCCCTTCTCTTCGGCTGGTTCCGAA
AGTTTGTGGCAGAGCGTGGAGCTGTAGGGACTAGCCTTGAGGGCCGCTGCCGGCAGCTGGAGGCCCAGAT
CAGAAGGCTACCCCAGGACCCTGCCCTTTGGGTGCTCCATGTCCTGCCCAACCATAGTGTGGGCATCAGC
CTGGGGCAAGGGGCAGAACCAGGTCCTGGACCAGGCCTGGGGACTGCCTGGCTCCTGGGAGACAACCCTC
CACTCCACCTGCGAGACCTGAGCCCCTACATCAGCTTTGTCAGCCTAGAGGATGGGGAGGAAGGGGAGGA
GGAAGAGGAGGAAGATGAAGAAGAAGAGAAGAGAGAGGACGGGGGTGCAGGCAGCACAGAGAAGGTGGAA
CCAGAGGAGGACCGGGAGCTAGCCCCTACCAGCAGGGAGTCCCCCCAGGAAACAAACCCTCCAGGAGAGT
CAGAGGAGGCTGCCCGGGAGGCAGGAGGTGGCAAGGATGGCTGCCGAGAGGACAGGGTGGAGAACGAAAC
AAGACCCCAGAAGAGGAAGGGACAGAGGAGTGAGGCTGCCCCCCTGCACGTTTCCTGTCTCTTACTTGTG
ACGGATGAGCATGGCACCATCTTGGGCATTGATCTGCTAGTGGATGGAGCCCAGGGAACCGCAAGCTGGG
GCTCAGGGACCAAGGACCTGGCTCCTTGGGCCTATGCTCTCCTCTGTCACAGCATGGCCTGTCCCATGGG
CTCTGGGGATCCCCGAAAGCCCCGACAGCTTACTGTGGGAGATGCCCGGCTGCATCGAGAGCTGGAGAGC
TTGGTCCCAAGGCTAGGTGTGAAGTTAGCCAAAACCCCAATGCGGACATGGGGTCCCCGGCCAGGCTTCA
CCTTTGCTTCCCTTCGTGCTCGAACCTGCCATGTGTGTCACAGGCACAGCTTTGAAGCGAAGCTGACACC
TTGCCCCCAGTGTAGTGCTGTCTTGTATTGTGGAGAGGCTTGTCTCCGGGCTGACTGGCAGCGGTGCCCA
GATGATGTGAGTCACCGATTTTGGTGCCCAAGGCTTGCAGCCTTCATGGAGCGGGCAGGAGAACTGGCAA
CCCTGCCTTTTACCTACACCGCAGAGGTGACCAGTGAAACCTTCAACAAAGAGGCCTTCCTGGCCTCTCG
GGGCCTCACTCGTGGCTATTGGACCCAGCTCAGCATGCTGATTCCAGGCCCGGGCTTCTCCAGACACCCC
CGAGGCAACACGCCATCCCTCAGCCTTCTTCGCGGTGGAGACCCCTACCAGCTTCTCCAGGGAGACGGGA
CTGCCCTGATGCCTCCTGTGCCCCCACATCCACCCCGGGGTGTTTTTGGCTCATGGCAGGATTACTACAC
ATGGCGGGGCCTCAGCTTGGACTCCCCCATAGCCGTGCTTCTCACCTACCCGCTGACCGTGTACTACGTC
ATCACCCACCTGGTGCCCCAGTCCTTCCCTGAGCTCAACATCCAAAACAAACAGTCACTGAAGATCCACG
TGGTGGAGGCCGGGAAGGAGTTTGACCTTGTCATGGTGTTTTGGGAGCTTTTGGTCCTGCTCCCCCATGT
GGCCCTGGAGCTGCAGTTTGTAGGTGATGGCCTGCCCCCCGAAAGCGACGAGCAGCATTTTACCCTGCAG
AGGGACAGCCTGGAGGTGTCTGTCCGGCCTGGTTCCGGCATATCAGCACGGCCCAGCTCTGGCACTAAGG
AGAAAGGGGGCCGCAGGGACCTGCAGATCAAGGTGTCAGCAAGGCCCTACCACCTGTTCCAGGGGCCCAA
GCCTGACCTGGTTATTGGATTTAACTCCGGGTTTGCTCTCAAGGATACGTGGCTGAGGTCTCTGCCCCGG
TTACAGTCCCTCCGAGTGCCAGCCTTCTTCACCGAGAGCAGCGAGTACAGCTGTGTGATGGACGGCCAGA
CCATGGCGGTGGCCACTGGAGGGGGCACCAGCCCTCCCCAGCCCAACCCCTTCCGCTCCCCCTTTCGCCT
CAGAGCGGCCGACAACTGCATGTCCTGGTACTGCAATGCCTTCATCTTCCACCTGGTTTACAAGCCTGCT
CAAGGGAGCGGGGCCCGCCCGGCGCCCGGGCCCCCACCCCCATCCCCAACTCCCTCTGCTCCTCCTGCCC
CCACCCGAAGGCGCCGAGGAGAAAAGAAACCTGGGCGGGGGGCCCGCCGGCGGAAATGA

Translation (742 aa):
MEFVSGYRDEFLDFTALLFGWFRKFVAERGAVGTSLEGRCRQLEAQIRRLPQDPALWVLHVLPNHSVGIS
LGQGAEPGPGPGLGTAWLLGDNPPLHLRDLSPYISFVSLEDGEEGEEEEEEDEEEEKREDGGAGSTEKVE
PEEDRELAPTSRESPQETNPPGESEEAAREAGGGKDGCREDRVENETRPQKRKGQRSEAAPLHVSCLLLV
TDEHGTILGIDLLVDGAQGTASWGSGTKDLAPWAYALLCHSMACPMGSGDPRKPRQLTVGDARLHRELES
LVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHRHSFEAKLTPCPQCSAVLYCGEACLRADWQRCP
DDVSHRFWCPRLAAFMERAGELATLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGFSRHP
RGNTPSLSLLRGGDPYQLLQGDGTALMPPVPPHPPRGVFGSWQDYYTWRGLSLDSPIAVLLTYPLTVYYV
ITHLVPQSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDGLPPESDEQHFTLQ
RDSLEVSVRPGSGISARPSSGTKEKGGRRDLQIKVSARPYHLFQGPKPDLVIGFNSGFALKDTWLRSLPR
LQSLRVPAFFTESSEYSCVMDGQTMAVATGGGTSPPQPNPFRSPFRLRAADNCMSWYCNAFIFHLVYKPA
QGSGARPAPGPPPPSPTPSAPPAPTRRRRGEKKPGRGARRRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH