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Report for CCDS45520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45520.1 Public Homo sapiens 16 PDPR 24 110 108 CCDS HistoryNCBI Gene:55066Re-query CCDS DB by CCDS ID:45520.1Re-query CCDS DB by GeneID:55066See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45520.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288050.9 ENSP00000288050.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000288050.9Link to Ensembl Protein Viewer:ENSP00000288050.5Re-query CCDS DB by Nucleotide ID:ENST00000288050Re-query CCDS DB by Protein ID:ENSP00000288050
Original member Current member EBI ENST00000568530.5 ENSP00000457916.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568530.5Link to Ensembl Protein Viewer:ENSP00000457916.1Re-query CCDS DB by Nucleotide ID:ENST00000568530Re-query CCDS DB by Protein ID:ENSP00000457916
Original member Current member NCBI NM_001322117.1 NP_001309046.1 Accepted alive Link to Nucleotide Sequence:NM_001322117.1Link to Protein Sequence:NP_001309046.1Re-query CCDS DB by Nucleotide ID:NM_001322117Re-query CCDS DB by Protein ID:NP_001309046Link to BLAST:NP_001309046.1
Original member Current member NCBI NM_017990.5 NP_060460.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017990.5Link to Protein Sequence:NP_060460.4Re-query CCDS DB by Nucleotide ID:NM_017990Re-query CCDS DB by Protein ID:NP_060460Link to BLAST:NP_060460.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309046.1 879 Q8NCN5-1 879 100% 0 0
NP_060460.4 879 Q8NCN5-1 879 100% 0 0

Chromosomal Locations for CCDS 45520.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 70120493 70120719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70127260 70127393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70128784 70128865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70128959 70129122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70130423 70130544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70131302 70131419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70132151 70132300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70136194 70136386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70138899 70139023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70142234 70142389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70142553 70142686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70143510 70143658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70144421 70144533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70146134 70146228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70148464 70148553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70153391 70153573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70156475 70156879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2640 nt):
ATGATGTTCTACCGGTTGCTGTCGATTGTTGGAAGACAAAGAGCCAGCCCAGGATGGCAGAACTGGTCCT
CTGCAAGAAACAGCACGTCAGCTGCCGAGGCGCGTTCCATGGCCCTGCCCACCCAGGCACAGGTGGTCAT
CTGTGGAGGTGGAATCACGGGCACTTCTGTGGCCTATCACCTCTCCAAAATGGGGTGGAAGGATATTGTC
CTTTTGGAGCAGGGCAGGCTGGCTGCTGGCTCTACCAGGTTCTGTGCTGGCATCCTGAGCACTGCCAGGC
ACTTGACCATTGAGCAGAAGATGGCAGACTACTCAAACAAACTCTACTATCAGTTAGAGCAAGAAACAGG
GATCCAAACAGGTTACACAAGGACAGGCTCAATCTTTCTGGCCCAAACTCAGGACCGACTGATCTCCCTG
AAGCGCATCAACGCAGGGCTGAATGTTATAGGTATCCCTTCTGAGATCATCTCCCCCAAGAAAGTGGCCG
AGCTTCACCATCTCCTCAACGTGCACGACCTGGTGGGGGCCATGCATGTTCCCGAGGATGCAGTGGTGTC
TTCCGCTGACGTGGCTCTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGTTCAGATCTATGACCGGACA
TCTGTTCTTCATGTAATGGTCAAAAAAGGTCAAGTTACTGGAGTGGAGACCGATAAAGGACAGATTGAAT
GCCAGTATTTTGTCAACTGTGCTGGCCAGTGGGCATACGAGCTGGGTCTGTCCAACGAGGAGCCGGTTAG
TATCCCGCTACATGCCTGCGAACACTTCTACCTCCTGACTCGCCCCTTGGAGACCCCTCTGCAGAGCAGC
ACACCAACTATTGTGGATGCTGATGGAAGAATTTATATTCGGAACTGGCAGGGTGGCATCCTGTCTGGGG
GCTTTGAGAAGAACCCGAAACCAATTTTCACTGAGGGCAAGAACCAGCTGGAGATTCAGAATCTACAGGA
AGACTGGGATCACTTTGAGCCTCTGTTGAGTTCCCTTCTGAGGAGGATGCCAGAATTAGAGACTCTGGAG
ATCATGAAGTTGGTGAACTGCCCAGAGACCTTCACACCAGACATGAGGTGCATCATGGGCGAGTCTCCTG
CAGTGCAGGGCTACTTTGTCCTGGCAGGAATGAACTCTGCTGGCCTTTCATTTGGTGGAGGAGCCGGAAA
GTACCTTGCCGAATGGATGGTACATGGTTATCCCTCAGAAAACGTTTGGGAATTGGACCTGAAACGTTTT
GGAGCCCTCCAGAGCAGCCGCACCTTTCTGCGCCACCGGGTCATGGAAGTCATGCCTTTGATGTATGATC
TGAAGGTTCCCCGCTGGGACTTCCAGACCGGTAGGCAGTTACGCACCTCTCCTCTCTACGACCGGCTGGA
TGCACAGGGAGCCAGGTGGATGGAGAAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCCCCCGACAAG
GACCTCCTGGCATTGGAGCAGAGCAAGACTTTCTATAAGCCAGATTGGTTTGACATCGTGGAGTCTGAAG
TCAAGTGCTGTAAGGAAGCTGTGTGTGTCATTGACATGTCCTCTTTCACAAAGTTTGAGATAACATCCAC
TGGGGATCAGGCATTAGAAGTTCTACAGTACCTCTTCTCCAATGACCTGGATGTGCCTGTGGGCCACATT
GTGCATACTGGCATGCTCAACGAGGGTGGAGGGTATGAAAATGACTGCAGCATAGCACGACTGAACAAGC
GCAGTTTCTTCATGATCTCTCCAACCGACCAGCAGGTCCACTGTTGGGCCTGGCTTAAGAAACACATGCC
GAAAGACAGCAACCTGCTCCTGGAGGACGTCACCTGGAAGTACACAGCCCTCAATCTGATTGGCCCTCGA
GCTGTGGATGTGCTGTCTGAGTTGTCCTATGCCCCTATGACTCCAGACCACTTCCCAAGCCTCTTTTGCA
AGGAGATGAGTGTGGGCTATGCAAATGGGATCCGGGTGATGAGCATGACGCACACAGGAGAGCCAGGATT
CATGCTCTACATCCCCATAGAGTACGCCCTGCATGTATACAATGAAGTGATGAGTGTTGGCCAGAAATAC
GGAATCCGGAATGCTGGGTATTACGCTCTTCGCAGTCTCCGAATTGAGAAGTTTTTTGCCTTCTGGGGTC
AGGATATAAATAACCTCACCACGCCCCTGGAATGTGGACGAGAGTCTCGGGTGAAATTAGAGAAGGGCAT
GGATTTCATTGGTCGCGACGCCCTCCTGCAGCAGAAGCAGAATGGAGTGTATAAACGCCTCACCATGTTC
ATCCTGGACGACCATGATTCAGACCTAGACCTTTGGCCTTGGTGGGGAGAGCCCATTTACCGGAATGGGC
AGTATGTTGGCAAGACCACCAGCAGTGCCTACAGCTACAGCCTGGAGCGCCACGTTTGCCTGGGCTTTGT
GCACAATTTTTCTGAGGACACGGGGGAAGAGCAAGTGGTGACAGCAGATTTCATCAACCGGGGAGAGTAT
GAGATTGACATCGCGGGATACCGCTTCCAGGCCAAGGCCAAGCTCTACCCTGTCGCCTCCCTCTTCACCC
AGAAGCGCCGAAAGGATGACATGGAGCTGAGTGACTTACATGGGAAGTGA

Translation (879 aa):
MMFYRLLSIVGRQRASPGWQNWSSARNSTSAAEARSMALPTQAQVVICGGGITGTSVAYHLSKMGWKDIV
LLEQGRLAAGSTRFCAGILSTARHLTIEQKMADYSNKLYYQLEQETGIQTGYTRTGSIFLAQTQDRLISL
KRINAGLNVIGIPSEIISPKKVAELHHLLNVHDLVGAMHVPEDAVVSSADVALALASAASQNGVQIYDRT
SVLHVMVKKGQVTGVETDKGQIECQYFVNCAGQWAYELGLSNEEPVSIPLHACEHFYLLTRPLETPLQSS
TPTIVDADGRIYIRNWQGGILSGGFEKNPKPIFTEGKNQLEIQNLQEDWDHFEPLLSSLLRRMPELETLE
IMKLVNCPETFTPDMRCIMGESPAVQGYFVLAGMNSAGLSFGGGAGKYLAEWMVHGYPSENVWELDLKRF
GALQSSRTFLRHRVMEVMPLMYDLKVPRWDFQTGRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPDK
DLLALEQSKTFYKPDWFDIVESEVKCCKEAVCVIDMSSFTKFEITSTGDQALEVLQYLFSNDLDVPVGHI
VHTGMLNEGGGYENDCSIARLNKRSFFMISPTDQQVHCWAWLKKHMPKDSNLLLEDVTWKYTALNLIGPR
AVDVLSELSYAPMTPDHFPSLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKY
GIRNAGYYALRSLRIEKFFAFWGQDINNLTTPLECGRESRVKLEKGMDFIGRDALLQQKQNGVYKRLTMF
ILDDHDSDLDLWPWWGEPIYRNGQYVGKTTSSAYSYSLERHVCLGFVHNFSEDTGEEQVVTADFINRGEY
EIDIAGYRFQAKAKLYPVASLFTQKRRKDDMELSDLHGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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