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Report for CCDS43553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43553.1 Public Homo sapiens 7 COL28A1 24 110 108 CCDS HistoryNCBI Gene:340267Re-query CCDS DB by CCDS ID:43553.1Re-query CCDS DB by GeneID:340267See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43553.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399429.8 ENSP00000382356.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399429.8Link to Ensembl Protein Viewer:ENSP00000382356.3Re-query CCDS DB by Nucleotide ID:ENST00000399429Re-query CCDS DB by Protein ID:ENSP00000382356
Original member Current member NCBI NM_001037763.3 NP_001032852.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001037763.3Link to Protein Sequence:NP_001032852.2Re-query CCDS DB by Nucleotide ID:NM_001037763Re-query CCDS DB by Protein ID:NP_001032852Link to BLAST:NP_001032852.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032852.2 1125 Q2UY09-1 1125 100% 0 0

Chromosomal Locations for CCDS 43553.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 7358633 7358805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7360390 7360528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7370725 7370882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7372998 7373546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7375461 7375497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7380660 7380695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7380782 7380862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7381544 7381612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7417859 7417927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7419885 7419953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7432473 7432541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7432632 7432700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7436395 7436463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7437394 7437462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7440790 7440861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7443585 7443653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7444418 7444489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7452319 7452387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7453440 7453508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7456044 7456112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7474601 7474669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7477112 7477180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7489389 7489457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7490578 7490646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7506014 7506067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7507117 7507161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7511091 7511135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7515814 7515840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7517796 7517837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7520062 7520115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7521905 7521961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7524229 7524249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7531348 7531904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7532752 7532875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3378 nt):
ATGTGGAACAGATATTTTGTCTTCTATCTCCTGCTTTTGTCAGCGTTTACGAGTCAAACAGTATCCGGAC
AAAGAAAGAAAGGACCAAAATCAAATTTGCTTGCAAGGAAAAGTGATGTCCAGGGCTCCATTTGTTTCAT
AGATATTGTCTTCATCGTGGACAGCTCTGAAAGTTCTAAAATTGCCCTCTTTGATAAACAGAAAGATTTT
GTGGATAGCTTGAGTGACAAGATTTTCCAATTGACTCCTGGTCGCTCCTTGGAATATGACATCAAACTGG
CAGCCCTTCAGTTTAGCAGCTCTGTCCAAATTGATCCACCTTTTTCTTCCTGGAAGGACCTGCAGACATT
TAAGCAGAAGGTCAAGTCTATGAATTTAATAGGGCAAGGTACCTTCTCTTATTATGCCATTTCCAATGCC
ACTAGGCTACTTAAGAGAGAAGGGCGTAAGGATGGTGTGAAAGTGGTTTTGCTGATGACTGATGGCATCG
ACCATCCAAAGAATCCAGATGTTCAAAGTATTTCTGAAGATGCCAGAATTTCAGGAATATCATTTATCAC
CATTGCACTTTCTACGGTAGTCAATGAAGCCAAACTTCGTTTGATTTCTGGGGATTCATCCAGTGAACCC
ACTTTACTGTTGAGTGATCCAACCCTTGTAGATAAAATTCAAGATCGTCTGGATATCTTATTTGAAAAGA
AGTGTGAACGCAAGATTTGTGAATGTGAGAAGGGAGATCCAGGTGATCCAGGGCCTCCTGGTACACATGG
AAATCCAGGTATCAAAGGTGAGCGAGGACCAAAAGGAAACCCGGGCAACGCTCAAAAAGGAGAAGCTGGA
GAAAGAGGTCCAGGGGGAATTCCTGGGTACAAGGGTGACAAGGGTGAACGTGGGGAATGTGGTAAACCAG
GGATAAAAGGTGACAAGGGATCCCCAGGGCCATATGGACCAAAGGGACCCAGAGGAATTCAGGGAATTAC
TGGACCTCCAGGAGACCCAGGCCCAAAGGGGTTTCAAGGCAATAAGGGTGAGCCAGGTCCTCCTGGTCCT
TATGGTTCTCCAGGAGCTCCTGGAATTGGACAGCAAGGTATTAAGGGAGAAAGAGGCCAAGAAGGAAGAC
CGGGAGCTCCAGGACCCATTGGAGTTGGTGAGCCTGGACAGCCAGGTCCCCGTGGTCCTGAGGGAGTACC
AGGAGAGAGGGGCTTACCCGGAGAAGGATTTCCAGGACCAAAGGGTGAAAAAGGTTCTGAAGGACCAACT
GGCCCACAGGGATTACAAGGCCTGTCAATCAAAGGGGAGAAGGGGGATATAGGACCTGTGGGACCCCAAG
GACCAATGGGTATCCCTGGAATCGGGAGTCAAGGGGAACAGGGAATCCAAGGTCCTATTGGTCCACCTGG
TCCACAAGGGCCCGCAGGACAGGGCTTACCTGGTTCCAAGGGAGAAGTAGGCCAAATGGGACCTACAGGC
CCTCGAGGACCAGTGGGAATTGGAGTACAAGGTCCAAAGGGAGAGCCAGGCTCAATAGGGCTCCCAGGAC
AACCAGGAGTACCAGGAGAAGATGGAGCTGCAGGGAAGAAGGGAGAAGCGGGGCTTCCGGGAGCAAGAGG
CCCAGAAGGACCACCTGGAAAAGGACAGCCTGGCCCCAAGGGTGACGAAGGCAAGAAAGGGAGCAAAGGA
AATCAAGGACAGAGGGGACTTCCAGGGCCCGAAGGACCAAAGGGTGAACCGGGCATTATGGGCCCTTTTG
GAATGCCTGGAACATCAATTCCTGGACCACCTGGGCCAAAGGGAGATAGAGGAGGACCTGGGATACCTGG
ATTTAAGGGAGAACCTGGACTTTCTATTCGAGGACCAAAGGGTGTCCAAGGCCCTCGGGGACCAGTGGGT
GCTCCAGGACTCAAAGGTGATGGCTATCCTGGTGTGCCTGGACCTCGTGGATTACCAGGACCCCCTGGGC
CGATGGGTTTACGTGGAGTGGGAGACACTGGAGCAAAGGGAGAGCCTGGGGTCAGAGGCCCTCCAGGTCC
TTCTGGGCCTCGGGGCGTAGGAACCCAAGGGCCAAAGGGTGATACTGGGCAGAAAGGCTTGCCTGGCCCT
CCTGGCCCCCCTGGCTATGGATCACAGGGAATTAAAGGGGAACAAGGACCACAAGGCTTCCCAGGCCCAA
AGGGCACAATGGGCCATGGCCTCCCAGGCCAGAAGGGAGAGCACGGAGAACGGGGCGATGTGGGAAAGAA
AGGTGATAAAGGAGAAATTGGAGAGCCTGGATCTCCAGGAAAACAGGGTTTACAAGGACCCAAAGGAGAC
CTAGGACTTACAAAAGAAGAAATTATCAAACTTATTACAGAAATATGTGGTTGTGGGCCCAAATGCAAAG
AGACTCCACTAGAGCTGGTGTTTGTGATCGACAGCTCAGAAAGCGTGGGGCCAGAGAACTTTCAGATCAT
TAAAAATTTTGTGAAGACTATGGCTGACCGGGTTGCTCTGGACCTTGCCACGGCCCGCATAGGCATAATC
AACTATAGCCATAAGGTGGAGAAGGTGGCTAATTTGAAGCAGTTCTCCAGCAAGGATGACTTCAAGTTGG
CTGTGGACAACATGCAGTATCTGGGGGAAGGCACATACACAGCCACTGCTCTGCAAGCAGCCAACGACAT
GTTTGAAGATGCAAGGCCAGGTGTAAAAAAAGTGGCCTTGGTCATCACTGATGGACAGACAGATTCTCGT
GATAAAGAGAAACTGACAGAGGTGGTGAAGAATGCCAGTGACACCAATGTGGAGATATTTGTGATAGGGG
TGGTGAAGAAAAATGATCCCAACTTTGAAATATTCCACAAAGAAATGAATCTAATTGCTACTGACCCAGA
GCATGTTTACCAGTTTGATGATTTCTTTACCCTGCAAGACACCCTGAAGCAAAAATTGTTTCAAAAAATT
TGTGAGGATTTTGATTCCTATCTCGTTCAAATTTTTGGTTCATCGTCACCTCAACCTGGATTTGGGATGT
CAGGGGAAGAACTCAGTGAATCTACTCCAGAGCCTCAAAAAGAAATTTCTGAGTCATTGAGTGTCACCAG
AGACCAGGATGAAGATGATAAGGCTCCAGAGCCAACGTGGGCTGATGATCTGCCTGCCACTACCTCATCT
GAGGCCACCACCACCCCCAGGCCACTGCTCAGCACCCCTGTGGATGGGGCAGAGGATCCTAGATGTTTGG
AAGCCTTGAAGCCTGGAAACTGTGGTGAATATGTGGTTCGATGGTATTATGACAAACAGGTCAACTCTTG
TGCCCGATTTTGGTTCAGTGGCTGTAATGGCTCAGGAAATAGATTCAACAGTGAAAAGGAATGTCAAGAA
ACCTGCATTCAAGGATGA

Translation (1125 aa):
MWNRYFVFYLLLLSAFTSQTVSGQRKKGPKSNLLARKSDVQGSICFIDIVFIVDSSESSKIALFDKQKDF
VDSLSDKIFQLTPGRSLEYDIKLAALQFSSSVQIDPPFSSWKDLQTFKQKVKSMNLIGQGTFSYYAISNA
TRLLKREGRKDGVKVVLLMTDGIDHPKNPDVQSISEDARISGISFITIALSTVVNEAKLRLISGDSSSEP
TLLLSDPTLVDKIQDRLDILFEKKCERKICECEKGDPGDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAG
ERGPGGIPGYKGDKGERGECGKPGIKGDKGSPGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGP
YGSPGAPGIGQQGIKGERGQEGRPGAPGPIGVGEPGQPGPRGPEGVPGERGLPGEGFPGPKGEKGSEGPT
GPQGLQGLSIKGEKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTG
PRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKG
NQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVG
APGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGP
PGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGD
LGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGII
NYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSR
DKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKI
CEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSS
EATTTPRPLLSTPVDGAEDPRCLEALKPGNCGEYVVRWYYDKQVNSCARFWFSGCNGSGNRFNSEKECQE
TCIQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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