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Report for CCDS42921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42921.1 Public Homo sapiens 21 RCAN1 24 110 108 CCDS HistoryNCBI Gene:1827Re-query CCDS DB by CCDS ID:42921.1Re-query CCDS DB by GeneID:1827See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42921.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443408.6 ENSP00000392438.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443408.6Link to Ensembl Protein Viewer:ENSP00000392438.2Re-query CCDS DB by Nucleotide ID:ENST00000443408Re-query CCDS DB by Protein ID:ENSP00000392438
Original member Current member EBI ENST00000487990.5 ENSP00000419252.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487990.5Link to Ensembl Protein Viewer:ENSP00000419252.1Re-query CCDS DB by Nucleotide ID:ENST00000487990Re-query CCDS DB by Protein ID:ENSP00000419252
Original member Current member EBI ENST00000482533.5 ENSP00000419624.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482533.5Link to Ensembl Protein Viewer:ENSP00000419624.1Re-query CCDS DB by Nucleotide ID:ENST00000482533Re-query CCDS DB by Protein ID:ENSP00000419624
Original member Current member EBI ENST00000620920.4 ENSP00000477646.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620920.4Link to Ensembl Protein Viewer:ENSP00000477646.1Re-query CCDS DB by Nucleotide ID:ENST00000620920Re-query CCDS DB by Protein ID:ENSP00000477646
Original member Current member NCBI NM_001285392.2 NP_001272321.1 Accepted alive Link to Nucleotide Sequence:NM_001285392.2Link to Protein Sequence:NP_001272321.1Re-query CCDS DB by Nucleotide ID:NM_001285392Re-query CCDS DB by Protein ID:NP_001272321Link to BLAST:NP_001272321.1
Original member Current member NCBI NM_001285393.2 NP_001272322.1 Accepted alive Link to Nucleotide Sequence:NM_001285393.2Link to Protein Sequence:NP_001272322.1Re-query CCDS DB by Nucleotide ID:NM_001285393Re-query CCDS DB by Protein ID:NP_001272322Link to BLAST:NP_001272322.1
Original member Current member NCBI NM_203417.2 NP_981962.1 Accepted alive Link to Nucleotide Sequence:NM_203417.2Link to Protein Sequence:NP_981962.1Re-query CCDS DB by Nucleotide ID:NM_203417Re-query CCDS DB by Protein ID:NP_981962Link to BLAST:NP_981962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272321.1 117 P53805-4 117 100% 0 0
NP_001272322.1 117 P53805-4 117 100% 0 0
NP_981962.1 117 P53805-4 117 100% 0 0

Chromosomal Locations for CCDS 42921.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 34518084 34518256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 34521499 34521658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 34523537 34523557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGAAGTTATATTTTGCTCAGACCTTACACATAGGAAGCTCACACCTGGCTCCGCCAAATCCAGACAAGC
AGTTTCTGATCTCCCCTCCCGCCTCTCCGCCAGTGGGATGGAAACAAGTGGAAGATGCGACCCCAGTCAT
AAACTATGATCTCTTATATGCCATCTCCAAGCTGGGGCCAGGGGAAAAGTATGAATTGCACGCAGCGACT
GACACCACTCCCAGCGTGGTGGTCCATGTATGTGAGAGTGATCAAGAGAAGGAGGAAGAAGAGGAAATGG
AAAGAATGAGGAGACCTAAGCCAAAAATTATCCAGACCAGGAGGCCGGAGTACACGCCGATCCACCTCAG
CTGA

Translation (117 aa):
MKLYFAQTLHIGSSHLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAAT
DTTPSVVVHVCESDQEKEEEEEMERMRRPKPKIIQTRRPEYTPIHLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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