NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4263.1 Public Homo sapiens 5 PCDHGC5 24 110 108 CCDS HistoryNCBI Gene:56097Re-query CCDS DB by CCDS ID:4263.1Re-query CCDS DB by GeneID:56097See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4263.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252087.3 ENSP00000252087.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252087.3Link to Ensembl Protein Viewer:ENSP00000252087.2Re-query CCDS DB by Nucleotide ID:ENST00000252087Re-query CCDS DB by Protein ID:ENSP00000252087
Original member Current member NCBI NM_018929.3 NP_061752.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018929.3Link to Protein Sequence:NP_061752.1Re-query CCDS DB by Nucleotide ID:NM_018929Re-query CCDS DB by Protein ID:NP_061752Link to BLAST:NP_061752.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061752.1 944 Q9Y5F6-1 944 100% 0 0

Chromosomal Locations for CCDS 4263.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141489241 141491700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2835 nt):
ATGGGGCCCAAGACACTCCCACAGCTCGCTGGGAAATGGCAAGTGCTGTGCATGTTGTCCTTGTGCTGCT
GGGGCTGGGTGTCTGGGCAGCTTCGTTACTCAGTGGTGGAGGAGTCTGAGCCGGGGACGCTGGTGGGGAA
TGTTGCTCAGGATCTGGGCTTAAAGATGACAGATCTGTTGAGCCGGCGGCTGCAATTGGGCTCTGAGGAG
AATGGGCGCTATTTTTCCCTGAGCTTGATGAGTGGTGCCCTGGCAGTGAATCAAAAGATTGACCGAGAAA
GCCTATGTGGAGCCAGCACCAGCTGCCTGCTGCCAGTGCAGGTGGTGACTGAACACCCCCTGGAGCTAAT
CCGTGTAGAGGTAGAGATCCTGGATCTCAATGACAACTCTCCTAGCTTTGCCACCCCTGAGCGAGAGATG
CGCATCTCAGAATCAGCAGCATCTGGGGCACGATTCCCACTGGACAGTGCCCAGGATCCGGATGTGGGCA
CCAATACTGTGAGCTTTTACACTCTAAGCCCCAACAGCCACTTCTCTCTGAATGTGAAGACCCTAAAAGA
TGGGAAGCCATTCCCAGAGCTGGTGCTAGAGCAGCAGCTGGATCGTGAAGCCCAGGCAAGACATCAGCTG
GTGCTTACTGCTGTGGATGGGGGGACCCCAGCCCGCTCAGGGACCACCCTTATCTCTGTCATCGTGCTGG
ACATCAATGATAATGCTCCAACCTTCCAATCCTCAGTTCTACGTGTGGGAATCCCAGAGAATGCACCCAT
TGGTACTCTGCTGCTCCGCCTCAATGCCACTGATCCAGACGAGGGCACCAACGGCCAACTAGACTATTCT
TTTGGAGACCACACATCTGAGGCAGTGCGGAACCTCTTTGGCCTAGACCCTAGCAGTGGGGCAATCCATG
TGTTGGGTCCCATAGACTTTGAGGAGTCACGTTTCTATGAAATTCATGCAAGAGCCCGTGACCAGGGACA
GCCTGCCATGGAGGGCCACTGTGTGATTCAAGTGGATGTGGGGGATGTCAATGACAATGCCCCAGAGGTG
CTATTGGCCTCTTTGGCCAACCCTGTCCTAGAGAGCACACCAGTGGGCACAGTAGTGGGGTTGTTTAATG
TGCGAGACCGGGACTCAGGTAGAAATGGTGAAGTGAGCCTTGATATCTCTCCGGACCTGCCATTTCAGAT
TAAGCCTTCTGAGAACCACTACTCGCTGCTAACCAGCCAGCCTTTGGACCGGGAGGCCACATCCCACTAT
ATCATCGAGCTGCTGGCCAGCGATGCTGGTTCACCTTCCCTACACAAACATCTCACCATCAGGCTCAACA
TTTCAGATGTCAATGACAATGCACCCCGCTTCAACCAGCAGCTTTACACTGCTTACATCCTAGAAAACCG
GCCTCCGGGCTCCCTTCTTTGCACTGTGGCTGCCTCAGATCCAGACACTGGGGATAATGCCCGCCTCACC
TACTCCATTGTAGGAAATCAGGTTCAGGGAGCCCCAGCCTCCTCCTTTGTGTATGTCAACCCAGAGGATG
GACGGATCTTTGCCCAGCGTACCTTTGACTATGAATTGCTGCAGATGCTGCAGATTGTGGTGGGGGTTCG
AGACTCCGGCTCTCCCCCATTGCATGCCAACACATCTCTGCATGTGTTTGTCCTAGACGAGAATGATAAT
GCCCCAGCTGTGCTGCACCCACGGCCAGACTGGGAACACTCAGCCCCCCAGCGTCTCCCTCGCTCTGCTC
CTCCTGGCTCCTTGGTCACCAAGGTGACAGCCGTGGATGCTGATGCAGGCCACAATGCGTGGCTCTCCTA
CTCACTGTTGCCACAGTCCACAGCCCCAGGACTGTTCCTCGTGTCTACACACACTGGTGAGGTGCGCACA
GCCCGGGCCTTACTGGAGGATGACTCTGACACCCAGCAGGTGGTGGTCCTGGTGAGGGACAATGGTGACC
CTTCACTCTCCTCCACAGCCACAGTGCTGCTGGTTCTGGAGGATGAGGACCCTGAGGAAATGCCCAAATC
CAGTGACTTCCTCATACACCCTCCTGAGCGTTCAGACCTTACCCTTTACCTCATTGTGGCTCTAGCGACC
GTCAGTCTCTTATCCCTAGTCACCTTCACCTTTCTGTCAGCGAAGTGCCTTCAGGGAAACGCAGACGGGG
ACGGGGGTGGAGGGCAGTGCTGCAGGCGCCAGGACTCACCCTCCCCGGACTTCTATAAGCAGTCCAGCCC
CAACCTGCAGGTGAGCTCGGACGGCACGCTCAAGTACATGGAGGTGACGCTGCGGCCCACAGACTCGCAG
AGCCACTGCTACAGGACGTGCTTTTCACCGGCCTCGGACGGCAGTGACTTCACTTTTCTAAGACCCCTCA
GCGTTCAGCAGCCCACAGCTCTGGCGCTGGAGCCTGACGCCATCCGGTCCCGCTCTAATACGCTGCGGGA
GCGGAGCCAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGC
TCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAAGCCATGA
TCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATT
GAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCA
GGCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCA
ACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (944 aa):
MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEE
NGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREM
RISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQARHQL
VLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYS
FGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEV
LLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHY
IIELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLT
YSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDN
APAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHTGEVRT
ARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHPPERSDLTLYLIVALAT
VSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQ
SHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSG
SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH