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Report for CCDS40749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40749.1 Public Mus musculus 9 Nphp3 23 108 98 CCDS HistoryNCBI Gene:74025Re-query CCDS DB by CCDS ID:40749.1Re-query CCDS DB by GeneID:74025See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035167.14 ENSMUSP00000035167.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035167.14Link to Ensembl Protein Viewer:ENSMUSP00000035167.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035167Re-query CCDS DB by Protein ID:ENSMUSP00000035167
Original member Current member NCBI NM_028721.3 NP_082997.3 Accepted alive Link to Nucleotide Sequence:NM_028721.3Link to Protein Sequence:NP_082997.3Re-query CCDS DB by Nucleotide ID:NM_028721Re-query CCDS DB by Protein ID:NP_082997Link to BLAST:NP_082997.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082997.3 1325 Q7TNH6-1 1325 100% 0 0

Chromosomal Locations for CCDS 40749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104002781 104003161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104004714 104004839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104005456 104005606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104008121 104008273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104009140 104009273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104011601 104011761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104015325 104015481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104016080 104016154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104018103 104018276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104020726 104020829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104021256 104021370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104022662 104022805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104023420 104023517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104024582 104024684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104025902 104025984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104029962 104030100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104031891 104032055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104033328 104033422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104034378 104034500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104035706 104035892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104036039 104036280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104037332 104037407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104038435 104038562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104039334 104039574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104040622 104040747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104041139 104041254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104041952 104042132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3978 nt):
ATGGGCACAGCCTCGTCGCTGGTGAGTCCCACTGGCGGGGAGGTGATCGAGGACACGTACGGGGCAGGCG
GCGGCGAGGCCTGCGAGATCCCGGTGGAAGTGAAACCCAAGGCCCGCCTGCTGCGCAGCTCGTTCCGCAG
GGGCGCGGGAGCCGGGCCCGGGTCGCTGCCTCGCGCGGCAGGGGGCGGCGGGCTGCTGGGCGCCAGCTTC
AAGTCCACCGGCTCGTCTGTGCCCGAGCTAGAGTATGCGGCGGCCGAGTTCGAGCGGCTCAAGAAAGAGT
ATGAGATCTTCCGGGTCAGCAAGAACCAGGAGTTGCTGTCCATGGGCCGCCGAGAGGCCAAGCTGGACAC
GGAGAACAAGCGGCTGCGGGCGGAGCTGCAGGCACTTCAGAAAACTTACCAGAAGATACTTCGGGAAAAA
GAGGGTGCGTTAGAAGCAAAATACCAAGCCATGGAGAGAGCGGTCACATTTGAACATGACAGAGACAGGG
TTAAAAGGCAATTCAAGATTTTTAGGGAAACCAAAGAAAATGAAATTCAGGACTTACTGAGGGCCAAGCG
AGAGTTGGAGAGCAAACTTCAGAGGCTGCAGGCTCAGGGGATCCAAGTGTTCGACCCTGGGGAGTCTGAC
TCGGATGACAACTGCACAGATGTCACTGCTGCGGGAACGCAATGTGAGTACTGGGCCAGCAGAGCCCTGG
GCAGCGAGCATTCCATAGGCAGCATGATCCAGCTCCCGCAGCCTTTCAGAGGCCCCGAGTTCGCCCACAG
TTCTATAGATGTGGAAGGACCCTTTGCAAACATCAACCGAGATGACTGGGACGCTGCTGTAGCTGGTTTA
TTACAGGCCACACCCTTGTTCTCACATTCCCTGTGGAGTCACCCTGTCAGGTGCTACCTCATCTACACAG
ATGAAACACAGCCCGAAATGGAACTGTTCCTTAAGGACCATTCACCTAAACTTAAAAGAATGTGCGAGAC
AATGGGATATTTCTTCCTCGCTGTTTATTTTCCATTAGATGTTGAAAATCAGTATCTCACTGTAAGAAAA
TGGGAAATTGAGAAGAGTTCTTTAGTTATTTTATTCCTTCACTCAACATTACCCAGTTTTTTACTGGAAG
ACTGTGAAGAAGCCTTCCTGCAAAACCCAGAAGGAAAGCCAGGATTAATCTACCACCGTTTGGAGGATGG
GAAAGTCACTTGTGACTCTGTCCAGCAGTTCCTGGATCAAGTTTCCAACCTAGGCAAGACCACTAAAGCC
AAGATCATTGAACACTCCGGAGATCCTGCAGAGGGAGTGTGTAAGATTTACGTGGGTGTGGAAAAGATTA
TTAAACAGGACATCCTTGGCCTCGAGAACACAGACGTGGAGGAGAAGGATGGGGGCAGAGAGGATTCCAC
TCCAGAAGAAGATGATTTCGGGGATGTTCTGTGGGACATACACGATGAGCAAGAGCAGATGGAAGCCTTT
CAGCAGACTTCTAGCTCCGCCCATGAACTGGGATTCGAGAAGTATTACCAGCGCCTGGATGATCTGGTGG
TGGCGCCAGCCCCGATCCCACCCCTCCTGGTTTCTGGCGGACCAGGTTCTGGGAAGTCCCTTCTTTTATC
AAAATGGATTCAGCTGCAGCAGAAGCATTTCCCAAACACCCTGATCCTGTCTCATTTTGTGGGGAGACCA
ATGTCAACCAGCTCAGAGTCCTCTTTGATTATCAAGCGGCTGACCCTGAAGCTGATGCAGCACTTCTGGG
CAGTTTCTGCACTGACACTGGATCCTGCTAAGCTTCTGGAGGAATTTCCACATTGGCTGGAGAAGCTCTC
TGCCCGGCATCAGGGCAGCATCATCATCATCATCGATTCCATAGATCAAGTTCAGCAAGTGGAGAAGCAC
ATGAAGTGGCTGATAGACCCCCTGCCGGTGAATGTCAGAGTCATTGTTTCTGTGAACGTGGAGACCTGCC
CCACAGCGTGGAGGTTGTGGCCTACACTGCATCTTGATCCTTTAAGCCCCAAGGACGCCATATCTATAAT
AACAGCAGAATGCTACTCCATGGATGTGCGGTTGAGCAGAGAGCAGGAGAAGATGCTAGAACAGCACTGC
CGTCCAGCCACAACACGCCACGCCCTCTATGTCACCCTTTTCAGCAAGATGATGGCCTGTGCCGGGAGAG
GGGGCAACGTAGCTGAAACCCTCCATCAGTGCCTGCAGTGTCAGGACACAGTGTCACTGTACAAACTCGT
TCTCCACCACGTCCGGGAGTCCATGCCAAGTGACAGGGATAAAGAGTGGATGACACAGATCCTCTGCCTC
ATCAACGTTAGTCACAATGGCGTGAGTGAGTCAGAGCTGATGGAGCTGTATCCAGAGATGTCCTGGCTCT
CTCTAACCTCCATCGTTCACAGTTTACACAAAATGCACCTGCTGACTTACAGCTGTGGCCTACTCAGGTT
TCAGCATCTACAGGCCTGGGAAACAGTGAGGCTGCAGTACCTGGAGGACCCCGCCCTCGTGTCTTCATAT
AGGGAAAAGCTCATTAGCTATTTTGCCTCACAGCTCAGTCAGGACAGAGTGACCTGGAGAAGCGCAGATG
AGCTCCCATGGCTCTTCCAGCAGCAGGGGAGCAAACAGAAGCTGCACAGTTGCCTCCTCAACCTCCTCGT
GGCTCAGAACCTTTACAAAAGAGGACACTTCGCCGAGTTGCTGAGTTACTGGCAGTTTGTAGGCAAAGAC
AAAGGTGCCATGGCGACCGAGTACTTTGAGTCACTGAAGCAGTATGAGAACAGCGAAGGCGAGGAGAACA
TGCTGTGCCTAGCCGACCTATATGAAACCCTCGGCCGCTTTCTGAAGGACCTAGGACTTCTCAGTCAGGC
CGTGGTGCCTTTGCAGAGGTCCCTAGAAATTCGGGAGACAGCCTTAGATCCTGATCACCCGAGAGTAGCC
CAGTCCCTCCACCAACTGGCCGGTGTGTACGTGCAGTGGAAGAAGTTCGGGGATGCGGAGCAGCTGTATA
AACAGGCCTTGGAGATCTCAGAAAACGCTTATGGTGCAGACCATCCGCATGCTGCTCGTGAACTGGAGGC
GCTGGCGACTCTGTACCACAAACAAAATAAGTACGAACAAGCTGAACATTTTAGGAAAAAATCAGTTATA
ATTCGTCAGCAAGCCACGAGGCGAAAAGGCAGCCTGTACGGGTTTGCCCTTCTACGCAGGCGGGCTCTGC
AGTTGGAAGAGCTCACCTTGGGCAAGGACAAGCCTGAGAACGCCCGCACCCTCAATGAGCTGGGTGTTCT
CTACTTCCTTCAAAATAACCTCGAGACAGCAGAGCAGTTTCTGAAGCGTTCCTTGGAAATGAGGGAGCGG
GTTCTGGGGCCAGATCACCCAGACTGCGCACAGTCCCTGAATAACCTGGCAGCTCTTTGCAATGAGAAGA
AGCAGTACGAGAAAGCAGAGGAGCTGTATGAGCGCGCCCTGGACATCCGGAGACGCGCACTGGCTCCGGA
CCACCCTTCCCTGGCCTACACCGTGAAGCACCTTGCAATCTTGTATAAGAAAACGGGAAAAGTTGACAAA
GCTGTACCTCTGTATGAATTGGCTGTTGAAATTCGGCAGAAATCCTTTGGCCCAAAGCACCCCAGTGTAG
CTACTGCCTTGGTAAACTTGGCAGTCCTTCATAGCCAAATGAAAAAGCACAGTGAAGCCCTGCCACTATA
TGAAAGAGCATTAAAGATTTATGAAGATAGCTTGGGGAGAATGCATCCTCGAGTTGGAGAAACATTGAAA
AATTTAGCTGTGCTCAGCTATGAAGAAGGGAATTTTGAAAAGGCTGCTGAACTGTACAAAAGGGCAATGG
AGATAAAAGAAGCAGAGACATCACTTTTGGGTGGAAAAGCTCCTTCAAGGCAGTCATCAAGTGGAGACAC
ATTTCTCTTTAAAACAACTCATTCCCCTAACGTTTTTCTTCCCCAAGGGCAAAGCTAA

Translation (1325 aa):
MGTASSLVSPTGGEVIEDTYGAGGGEACEIPVEVKPKARLLRSSFRRGAGAGPGSLPRAAGGGGLLGASF
KSTGSSVPELEYAAAEFERLKKEYEIFRVSKNQELLSMGRREAKLDTENKRLRAELQALQKTYQKILREK
EGALEAKYQAMERAVTFEHDRDRVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQAQGIQVFDPGESD
SDDNCTDVTAAGTQCEYWASRALGSEHSIGSMIQLPQPFRGPEFAHSSIDVEGPFANINRDDWDAAVAGL
LQATPLFSHSLWSHPVRCYLIYTDETQPEMELFLKDHSPKLKRMCETMGYFFLAVYFPLDVENQYLTVRK
WEIEKSSLVILFLHSTLPSFLLEDCEEAFLQNPEGKPGLIYHRLEDGKVTCDSVQQFLDQVSNLGKTTKA
KIIEHSGDPAEGVCKIYVGVEKIIKQDILGLENTDVEEKDGGREDSTPEEDDFGDVLWDIHDEQEQMEAF
QQTSSSAHELGFEKYYQRLDDLVVAPAPIPPLLVSGGPGSGKSLLLSKWIQLQQKHFPNTLILSHFVGRP
MSTSSESSLIIKRLTLKLMQHFWAVSALTLDPAKLLEEFPHWLEKLSARHQGSIIIIIDSIDQVQQVEKH
MKWLIDPLPVNVRVIVSVNVETCPTAWRLWPTLHLDPLSPKDAISIITAECYSMDVRLSREQEKMLEQHC
RPATTRHALYVTLFSKMMACAGRGGNVAETLHQCLQCQDTVSLYKLVLHHVRESMPSDRDKEWMTQILCL
INVSHNGVSESELMELYPEMSWLSLTSIVHSLHKMHLLTYSCGLLRFQHLQAWETVRLQYLEDPALVSSY
REKLISYFASQLSQDRVTWRSADELPWLFQQQGSKQKLHSCLLNLLVAQNLYKRGHFAELLSYWQFVGKD
KGAMATEYFESLKQYENSEGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVA
QSLHQLAGVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARELEALATLYHKQNKYEQAEHFRKKSVI
IRQQATRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVLYFLQNNLETAEQFLKRSLEMRER
VLGPDHPDCAQSLNNLAALCNEKKQYEKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKTGKVDK
AVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQMKKHSEALPLYERALKIYEDSLGRMHPRVGETLK
NLAVLSYEEGNFEKAAELYKRAMEIKEAETSLLGGKAPSRQSSSGDTFLFKTTHSPNVFLPQGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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