NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40512.1 Public Mus musculus 8 Gas8 23 108 98 CCDS HistoryNCBI Gene:104346Re-query CCDS DB by CCDS ID:40512.1Re-query CCDS DB by GeneID:104346See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093043.6 ENSMUSP00000090730.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093043.6Link to Ensembl Protein Viewer:ENSMUSP00000090730.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093043Re-query CCDS DB by Protein ID:ENSMUSP00000090730
Original member NCBI NM_018855.2 NP_061343.2 Updated not alive Link to Nucleotide Sequence:NM_018855.2Link to Protein Sequence:NP_061343.2Re-query CCDS DB by Nucleotide ID:NM_018855Re-query CCDS DB by Protein ID:NP_061343
Current member NCBI NM_018855.3 NP_061343.2 Accepted alive Link to Nucleotide Sequence:NM_018855.3Link to Protein Sequence:NP_061343.2Re-query CCDS DB by Nucleotide ID:NM_018855Re-query CCDS DB by Protein ID:NP_061343Link to BLAST:NP_061343.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061343.2 478 Q60779 478 100% 0 0

Chromosomal Locations for CCDS 40512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123518950 123518952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123520604 123520690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123522938 123523135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123524078 123524284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123525619 123525673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123526465 123526670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123527912 123528079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123528378 123528464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123530827 123531036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123533253 123533318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123536373 123536522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCACCCAAAAAGAAAGGGAAGAAGGGGAAAGCCAAAGGGACCGCGATTGTTGATGGCGTCGCACCAG
AGGACATGACCAAGGAGCAGGTGGAGGAACATGTCGCCCGCATCCGGGAGGAGCTGGACAGGGAGAGAGA
GGAGCGTAACTACTTCCAGCTGGAGCGCGACAAGATCCACACCTTCTGGGAGATCACGCGGAGGCAGCTG
GAGGAGAAGAAGGCTGAGCTGCGCAACAAAGACCGGGAGATGGAGGAGGCCGAGGAGAGGCACCAGGTGG
AGATCAAGGTATACAAGCAGAAGGTGAAGCACCTGCTGTACGAGCACCAGAACAACTTGGCTGAGGTGAA
GGCTGAGGGCACCGTGGTCATGAAGCTGGCCCAGAAGGAGCACCGCACCCAGGAGGGCGCTCTGCGCAAG
GACATGCGGGTGCTGAAGGTGGAGCTCAAGGAGCAGGAGCTGGCTAACGAGGTGGTCATAAAGAACCTGT
GCCTGAAACAAGCCGAGGAGATCACCAAGATGCGAAATGACTTTGAAAGGCAAGTTCGAGAAATTGAGGC
CAAGTATGATAAGAAGATGAAGATGCTTAGAGACGAACTTGACCTGCGGAGGAAGACTGAGATCCATGAG
GTAGAGGAGAGGAAAAACGGCCAGATCAGCACTCTGATGCAGCGCCACGAGGAGGCCTTCACGGACATCA
AGAACTACTACAACGACATCACTCTCAACAACCTGGCCCTCATCAACTCCCTCAAGGAGCAGATGGAGGA
CATGCGTAAGAAGGAGGAACACATGGAGAGGGAGATGGCGGAGGTGACTCTGCAGAACCGGCGGCTGGCC
GACCCGCTGCAGAAAGCCAAGGACGAGATGAACGAGATGCAGAAGAGACTGGGGAACCACGAGAGGGACA
AGCAGATTCTGGTCTGTACAAAGGCACGTTTGAAGGTGGCTGAGAGGGAGCTAAAGGACCTGAAATGGGA
ACATGAGGTCCTGGAGCAGAGGTTCATCAAGGTGCAGCAGGAGAGGGAAGAGCTCTATCGGAAGTTTGCA
GACGCCATCCAGGAGGTGCAGCAGAAGACGGGCTTCAAGAACCTGCTGCTGGAGCGGAAGCTGCAGGCCC
TGAACGCTGCTGTGGAGAAGAGAGAGGTTCAGTTCAATGAGGTGCTGGCCGCCTCCAACCTGGACCCCAC
AGCATTAACGCTTGTGTCCCGCAAACTTGAGGATGTTCTAGAATCGAAGAATACCACCATCAAGGACTTA
CAGTATGAGCTGGCCCGGGTCTGCAAGGCCCACAATGACCTGCTGCGTACATATGAGGCGAAGTTACTGG
CCTTCGGGATCCCCCTGGACAATGTGGGGTTCAAGCCCCTGGAGACAGCAGTGATTGGACAGACACTGGG
ACAGGGCCCTGCAGGACTTGTGGGTGCCCCTACATAG

Translation (478 aa):
MAPKKKGKKGKAKGTAIVDGVAPEDMTKEQVEEHVARIREELDREREERNYFQLERDKIHTFWEITRRQL
EEKKAELRNKDREMEEAEERHQVEIKVYKQKVKHLLYEHQNNLAEVKAEGTVVMKLAQKEHRTQEGALRK
DMRVLKVELKEQELANEVVIKNLCLKQAEEITKMRNDFERQVREIEAKYDKKMKMLRDELDLRRKTEIHE
VEERKNGQISTLMQRHEEAFTDIKNYYNDITLNNLALINSLKEQMEDMRKKEEHMEREMAEVTLQNRRLA
DPLQKAKDEMNEMQKRLGNHERDKQILVCTKARLKVAERELKDLKWEHEVLEQRFIKVQQEREELYRKFA
DAIQEVQQKTGFKNLLLERKLQALNAAVEKREVQFNEVLAASNLDPTALTLVSRKLEDVLESKNTTIKDL
QYELARVCKAHNDLLRTYEAKLLAFGIPLDNVGFKPLETAVIGQTLGQGPAGLVGAPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH