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Report for CCDS39715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39715.1 Public Mus musculus 6 Ppfibp1 23 108 98 CCDS HistoryNCBI Gene:67533Re-query CCDS DB by CCDS ID:39715.1Re-query CCDS DB by GeneID:67533See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016631.13 ENSMUSP00000016631.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016631.13Link to Ensembl Protein Viewer:ENSMUSP00000016631.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000016631Re-query CCDS DB by Protein ID:ENSMUSP00000016631
Original member Current member NCBI NM_001355729.1 NP_001342658.1 Accepted alive Link to Nucleotide Sequence:NM_001355729.1Link to Protein Sequence:NP_001342658.1Re-query CCDS DB by Nucleotide ID:NM_001355729Re-query CCDS DB by Protein ID:NP_001342658Link to BLAST:NP_001342658.1
Original member Current member NCBI NM_026221.2 NP_080497.1 Accepted alive Link to Nucleotide Sequence:NM_026221.2Link to Protein Sequence:NP_080497.1Re-query CCDS DB by Nucleotide ID:NM_026221Re-query CCDS DB by Protein ID:NP_080497Link to BLAST:NP_080497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342658.1 969 Q8C8U0-1 969 100% 0 0
NP_080497.1 969 Q8C8U0-1 969 100% 0 0

Chromosomal Locations for CCDS 39715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 146976639 146976702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146978044 146978249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146990514 146990600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146992402 146992515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146993306 146993437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146996390 146996482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146998167 146998281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147000941 147001002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147002194 147002269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147005848 147006002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147009972 147010087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147010863 147010919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147012455 147012518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147016222 147016393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147019034 147019181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147019460 147019588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147021301 147021451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147022146 147022257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147022362 147022450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147025515 147025637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147026155 147026280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147027308 147027496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147029561 147029737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147030083 147030148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147030314 147030400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2910 nt):
ATGATGAGTGACGCTAGTGACATGCTGGCCGCGGCGCTGGAGCAGATGGACGGAATCATAGCAGGTTCTA
AAGCCTTGGAGTATTCCAATGGGATTTTTGATTGCCAATCTCCCACCTCCCCATTTATGGGAAGCTTGCG
CGCTCTGCACCTTGTGGAAGACCTGCGTGGATTGTTGGAGATGATGGAAACGGATGAGAAGGAAGGATTG
AGATGCCAGATCCCAGATTCAACAGCAGAAGTGCTTATTGAGTGGCTTCAAAATCAAATGACAAATGGAC
ATCTACCTGGGAATGGAGATGTGTATCAAGAAAGGTTGGCACGTCTAGAAAACGACAAGGAATCCCTCGT
TCTTCAGGTAAGTGTGTTGACAGACCAGGTGGAGGCTCAGGGAGAGAAGATTCGGGATTTGGAGTTCTGT
CTTGAAGAGCACAGAGAGAAGCTGAATGCCACTGAAGAAATGCTGCAGCAGGAGCTTCTGAGTAGGACCT
CCTTAGAGACACAGAAGCTGGAGCTGATGGCTGAGATCTCTAACTTGAAGTTAAAACTGACGGCCGTAGA
GAAGGACAGGCTGGATTATGAAGATCGGTTCAGAGACACAGAGGGGCTAATTCAAGAGATCAATGATTTG
AGGCTAAAAGTCAATGAAATGGACGGTGAAAGACTTCAGTATGAAAAGAAGCTCAAGTCAACTAAAGACG
AATTGGCATCTTTAAAAGAGCAACTGGAGGAGAAGGAATGTGAAGTAAAGAGGCTGCAGGAGAGACTGGT
TTGTAAGGCGAAAGGAGAAGGGATCGAAGTCCTCGATCGAGACATTGAAGTACAGAAAATGAAGAAGGCA
GTGGAGTCTCTGATGGCAGCGAATGAAGAAAAGGAGCGGAAAATAGAAGACCTGCGGCAGTGCCTGAGCA
GGTACAGGAAAATGCAGGACCCAGCAGTTCTGGCCCAAGGTCAGGATAGTGAGTGTGAGGGCCTGTTCCA
TTCCAGCTCTATCTCCACCCTGTTGGATGCACAGGGTTTTAGTGATCTGGAGAGAAGCACTTCTTCTACG
CCAGGAATGGGGTCTCCCAGCAGGGACCTGCTCCACACGAGTGCTCCAGAAGAGTTTCACACCAGCGTCT
TGCAAGCTTCAATCCCTTCACTATTGCCGCCATCTGTGGATGTAGACACTTGTGAAAAACCCAAGTTGCC
TACCAAGCCCGAGACTTCATTTGAAGAGGGTGACGGAAGAGCAATCCTGGGCGCTGCCGCTGAAGTCTCC
CTGAGTGATGGTGTTTCAACTTCAAGTCTGCAGAAATCTAGCAGCCTTGGAAATCTGAAGAAAGAGGCAT
CGGATGGCACGGATAAAGCTCCGACTGACAGCCGCACGTTTGGGACCCTGCCTCCCAAGGTCCCAGGACA
CGAAGCCTCTGTGGATGACAACCCCTTTGGCACTCGCAAAGCCAGGTCCTCATTTGGCCGGGGCTTTTTT
AAAATCAAAAGTGGAAAGAGGACAGCAAGTGCACCCAACCTTGCTGAGACAGAAAAAGAGACAGCTGAGC
ACCTGAATTTGGCTGGTACATCTCGGTCAAAAGGTTCCCAGGGAACCAGTCCATTCCCAATGTCTCCACC
ATCTCCAGATTCCAGAAAGAAATCCAGAGGCATCATGAGACTCTTTGGGAAACTTAGAAGAAGTCAGTCA
ACTACATTCAACCCAGATGACATGTCTGAGCCTGAATTCAAAAGAGGAGGGACAAGGGCAACTGCAGGAC
CCAGGCTTGGTTGGTCTCGAGATTTAGGACAGTCCAACAGTGACCTGGATATGCCATTTGCCAAATGGAC
CAAGGAGCAGGTGTGTAGCTGGCTGGCAGAGCAAGGCTTGGGGTCCTACCTGAGTTCTGGCAAGCACTGG
ATTATATCTGGCCAGACCCTTTTGCAGGCTTCTCAGCAGGATCTGGAGAAGGAACTTGGCATCAAGCATT
CACTGCATCGTAAGAAGCTCCAGCTGGCCCTGCAGGCCCTGGGATCTGAAGAAGAAACCAACTATGGGAA
GCTAGACTTCAACTGGGTTACTAGATGGCTGGATGATATTGGCCTCCCTCAGTACAAGACCCAGTTTGAT
GAAGGGCGGGTGGACGGTCGAATGCTGCACTACATGACTGTGGATGACCTACTGTCCCTGAAGGTTGTCA
GTGTGCTGCACCATCTCAGTATCAAAAGGGCCATCCAAGTGCTGAGGATCAATAACTTTGAGCCAAACTG
TCTAAGGAGGCGGCCGTCTGATGAGAATAGCATCACCCCATCTGAGGTTCAGCAGTGGACCAATCATCGT
GTGATGGAGTGGCTTCGCTCTGTGGACTTGGCAGAATATGCCCCCAATCTCAGAGGCAGTGGTGTCCATG
GAGGGCTCATGGTTCTTGAGCCTCGTTTTAATGTAGAAACTATGGCCCAGTTACTGAACATTCCACCAAA
TAAAACCTTGTTGCGCAGACATTTGGCGACCCATTTCAACCTTCTGATTGGTGCAGAGGCCCAGCACCAG
AAGCGAGATGCCATGGAGTTACCGGATTATGTACTGCTAACAGCCACTGCCAAAGTGAAGCCGAAGAAGC
TGACCTTTAGCAACTTTGGGAATCTGAGGAAGAAGAAACATGAAGATGGAGAGGAATATGTTTGTCCGAT
GGAGCTAGGCCAGGCATCAGGTAGCTCCCAGAAGGGGTTTAGACCTGGCTTGGACATGCGCCTGTATGAA
GAGGATGATTTGGATCGGTTAGAGCAGATGGAAGATTCAGAAGGGACGGTGAGACAGATAGGTGCATTTT
CTGAAGGCATCAACAATCTCACGCACATGTTAAAGGAAGATGACATGTTTAAGGATTTTGCTGCCCGCTC
CCCGAGTGCCAGCATCACAGATGAAGACTCCAACGTTTGA

Translation (969 aa):
MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLEMMETDEKEGL
RCQIPDSTAEVLIEWLQNQMTNGHLPGNGDVYQERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFC
LEEHREKLNATEEMLQQELLSRTSLETQKLELMAEISNLKLKLTAVEKDRLDYEDRFRDTEGLIQEINDL
RLKVNEMDGERLQYEKKLKSTKDELASLKEQLEEKECEVKRLQERLVCKAKGEGIEVLDRDIEVQKMKKA
VESLMAANEEKERKIEDLRQCLSRYRKMQDPAVLAQGQDSECEGLFHSSSISTLLDAQGFSDLERSTSST
PGMGSPSRDLLHTSAPEEFHTSVLQASIPSLLPPSVDVDTCEKPKLPTKPETSFEEGDGRAILGAAAEVS
LSDGVSTSSLQKSSSLGNLKKEASDGTDKAPTDSRTFGTLPPKVPGHEASVDDNPFGTRKARSSFGRGFF
KIKSGKRTASAPNLAETEKETAEHLNLAGTSRSKGSQGTSPFPMSPPSPDSRKKSRGIMRLFGKLRRSQS
TTFNPDDMSEPEFKRGGTRATAGPRLGWSRDLGQSNSDLDMPFAKWTKEQVCSWLAEQGLGSYLSSGKHW
IISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNYGKLDFNWVTRWLDDIGLPQYKTQFD
EGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENSITPSEVQQWTNHR
VMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGAEAQHQ
KRDAMELPDYVLLTATAKVKPKKLTFSNFGNLRKKKHEDGEEYVCPMELGQASGSSQKGFRPGLDMRLYE
EDDLDRLEQMEDSEGTVRQIGAFSEGINNLTHMLKEDDMFKDFAARSPSASITDEDSNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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