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Report for CCDS39087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39087.1 Public Mus musculus 5 Zcchc4 23 108 98 CCDS HistoryNCBI Gene:78796Re-query CCDS DB by CCDS ID:39087.1Re-query CCDS DB by GeneID:78796See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031077.12 ENSMUSP00000031077.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031077.12Link to Ensembl Protein Viewer:ENSMUSP00000031077.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031077Re-query CCDS DB by Protein ID:ENSMUSP00000031077
Original member Current member NCBI NM_030185.3 NP_084461.1 Accepted alive Link to Nucleotide Sequence:NM_030185.3Link to Protein Sequence:NP_084461.1Re-query CCDS DB by Nucleotide ID:NM_030185Re-query CCDS DB by Protein ID:NP_084461Link to BLAST:NP_084461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084461.1 512 Q8BKW4-1 512 100% 0 0

Chromosomal Locations for CCDS 39087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 52783091 52783214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52783989 52784107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52785098 52785180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52795977 52796252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52796582 52796659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52804379 52804451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52806957 52807107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52808260 52808360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52815801 52815922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52816162 52816237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52818607 52818658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52819121 52819404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGCGGCGCCCATGGACTGTCTTGAGTCCCTGGAGGGTGATGGCGACGCGGGGCGTAGGGCGTCCGGGG
TAGAGGTGGCGCTTCCCTCGAACCCCACGGCTCCTGCCCCGCTGTGCCCGCACGGGCCTACTCTTCTCTT
TGTAAAAGTGAACCAAGGGAAGGAAGAAACACGAAAGTTTTATGCCTGCTCAGCCTGTAGAGATAGAAAA
GACTGTAACTTTTTTCAGTGGGAAGATGAAAAGTTGTCAGAAGCTAGACTTGCTGCCCGAGAAATTCATA
ATCAAAAATGCCAGCCTCCTCTATCCCGGGCACAATGCATAGAAAGGTACCTGAGTTTCATTCAGTTGCC
CTTGGCTCAAAGAAAGTTCTGTCAAAGTTGCCAGCAGTTGCTGTTACCTGCAGACTGGAGGGAGCACGGC
ACGCATCAGCTGTCAGCTGACATTTCTGTCGCCCAGCTTGGAAGGCCCAGTCAGCTGCTCTACCCACTGG
AGAACAAGAAGACGCACGCCCAGTACCTGTTTGCTGACAGGAGCTGCCAGTTTCTGGCAGGCCTCCTTGC
TACCCTCGGATTCAGCAGAGTGTTGTGTGTTGGAGCACCAAGGCTCCACGAGCAGATCAGGCTAACAGCA
TCAGGTGAGAGGTCCGGCATGAGGAGCCTTTTATTGGACATTGACTTTCGATATTCACAGTTTTACCTGG
AAGGAAGCTTTTGCCGCTATAACATGTTCAACCATCATTTCTTTGATGGAAAGGCTGCCCTTGAAGTGTG
CAAGGAATTCTTACAGGAAGAGGAAGGCAAGGGGGTGATTATGGTGACAGACCCTCCCTTTGGCGGCTTG
GTGGAACCTCTGGCTATTACATTCAAGAAGTTAATTGCTATGTGGAAAGAAGGTCAAAGCCAAGATGACA
GCCACAAAGAACTGCCCATTTTCTGGATTTTCCCCTATTTTTTTGAATCACGGATTTGTCAGTTTTTCCC
GAGCTTCTGCATGCTGGATTACCAGGTGGATTATGATAATCATGCGCTTTACAAACATGGAAAGACAGGT
CGAAAACAGTCTCCTGTCCGAATTTTCACCAACGTTCCACCCAACAAAATAATCCTTCCATCAGAGGAAG
GATACAGATTTTGCTCCCTCTGTCAGAGATATGTCTCTCGTGAGAACCAGCACTGTGTGCATTGTAATTC
TTGCACATCCAAGGACGGCAGGAAATGGAGCCATTGCTTTCTCTGCAAAAAGTGTGTGAAGCCTTCCTGG
ATCCATTGTAACACCTGCAATCGCTGTGCACTCCCAGACCATTCCTGTTTGGGGCCTAAAGATGGCTGCT
TTATTTGTGGTGCGCTGGATCACAAACGCAGCAATTGTCCCAACATCGGCACCTCTTGGAGAGCTAACAA
GTTAGTTGAATTCTTTGGCTTTCTGGAAAAAAGATTGCTCATGTCAAGCTTCCTAGGAGCAATCTACAGA
AGTACAAAGCTTTCAGAGGACTCAGAATTTTTCAGAGTGCTAAATCGTTCCTCTCACCATTACGTGTGA

Translation (512 aa):
MAAPMDCLESLEGDGDAGRRASGVEVALPSNPTAPAPLCPHGPTLLFVKVNQGKEETRKFYACSACRDRK
DCNFFQWEDEKLSEARLAAREIHNQKCQPPLSRAQCIERYLSFIQLPLAQRKFCQSCQQLLLPADWREHG
THQLSADISVAQLGRPSQLLYPLENKKTHAQYLFADRSCQFLAGLLATLGFSRVLCVGAPRLHEQIRLTA
SGERSGMRSLLLDIDFRYSQFYLEGSFCRYNMFNHHFFDGKAALEVCKEFLQEEEGKGVIMVTDPPFGGL
VEPLAITFKKLIAMWKEGQSQDDSHKELPIFWIFPYFFESRICQFFPSFCMLDYQVDYDNHALYKHGKTG
RKQSPVRIFTNVPPNKIILPSEEGYRFCSLCQRYVSRENQHCVHCNSCTSKDGRKWSHCFLCKKCVKPSW
IHCNTCNRCALPDHSCLGPKDGCFICGALDHKRSNCPNIGTSWRANKLVEFFGFLEKRLLMSSFLGAIYR
STKLSEDSEFFRVLNRSSHHYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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