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Report for CCDS38831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38831.1 Public Mus musculus 4 Glis1 23 108 98 CCDS HistoryNCBI Gene:230587Re-query CCDS DB by CCDS ID:38831.1Re-query CCDS DB by GeneID:230587See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38831.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046005.8 ENSMUSP00000035650.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046005.8Link to Ensembl Protein Viewer:ENSMUSP00000035650.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000046005Re-query CCDS DB by Protein ID:ENSMUSP00000035650
Original member Current member NCBI NM_147221.2 NP_671754.2 Accepted alive Link to Nucleotide Sequence:NM_147221.2Link to Protein Sequence:NP_671754.2Re-query CCDS DB by Nucleotide ID:NM_147221Re-query CCDS DB by Protein ID:NP_671754Link to BLAST:NP_671754.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_671754.2 789 Q8K1M4-1 789 100% 0 0

Chromosomal Locations for CCDS 38831.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107435682 107435937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107563845 107564013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107567619 107568501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107614972 107615133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107619554 107619664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107623103 107623235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107627460 107627616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107631754 107631926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107632262 107632429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107634589 107634746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGCATTGCGAGGTGGCCGAGGCACTTTCGGACAAGAGGCCAAAGGAGGCCCCTGGTGCTCCTGGCCAGG
GCCGCGGGCCTGTCAGCCTGGGAGCGCACATGGCCTTCAGGATTGCTGTGAGTGGTGGCGGCTGCGGGGA
CGGGAACCCGCTAGACCTGCTGCCTCGGCTACCGGTGCCACCACCACGTGCCCACGATCTCCTTCGGCCC
CGGAGCCCTCGAGACTATGGTGTGTCCAAGACCGGCAGCGGGAAGGTGAACGGGAGCTACGGGCACAGCT
CAGAGAAGAGCCTGCTGGACCTGGACCTGGCCGAGGGTCCCAGCCCCTCCTGCCACCAGGGTCTGTTTCT
TCCTGCAGGGACCCCACCACCCCGGGGTCACCCCCCTGTCTGTGAGAAGCTGCTGCACTTCCCCCACCCA
AACAGGTCACCCAGACCTCAGGCTACGTTTGTGAACGGCAGCCTCCCAGCCGCTCAGCACATCAAGCAAG
AAGCCCTACCGGACTACCAGGCCATGGTCAGCGCCCACACACCCCTGCCCACCCACTGCCGAGCCCCATC
GTCCATGGGTCTGCCCTCAGACCTGGACTTTCCAGACCGAGGCCTCACCAACCCTGCACCTTCCTGCTAC
CTTCTGGGCAATGAACCCATCTCAGACCTGGGTCCCCAACCCGAGGCCCACCTCCCCGAGGGCAGCCTGA
AACGCTGCTGCCTCCTGGGCCTGCCCCCCACCTCTTCAGCCTCCTCCTCACCCTGTGCCTCCTCAGATAT
CAATCCTGTCATCCACTCCTCCCAGACAGCTCTAGTTAGCTGTGTAAATGGACTCCGAAGCCCACCTCTG
CCGGGAGACCTGGGGGGCCCTCCCAAGCGGTCACGGCCCGGGCCTGCATCCAGTGACGGCCAGGAGGGCA
GCTTGCAGCTTGAAGCATGCCGGAAGTCAGGCTTCCTGAAGCAGGAGCCCATGGACGAGTTTTCAGAGCT
TTTTGCTCCACACCACCAGGGTTTGCCACCCCCTTACCCCTTGCCTCAGTTGCCAACTGGCCCCGGCCTC
GGAGGCCTAGGGCTGGGCCTGGCAGGTAGGATGGTTGCCGGTCGGCAGGCATGCCGCTGGGTGGACTGCT
GCGCAGCCTACGAGCAGCAGGAGGAGCTGGTGCGGCACATCGAGAAGAGCCACATCGACCAGCGCAAGGG
CGAAGACTTCACCTGCTTCTGGGCCGGGTGTGTGCGGCGCTACAAGCCCTTCAATGCCCGCTACAAGCTG
CTCATCCACATGAGGGTACACTCAGGCGAGAAGCCCAACAAGTGCATGTTCGAAGGCTGCAGTAAAGCCT
TTTCCCGTCTGGAGAACCTGAAGATCCATCTGCGGAGCCACACAGGCGAGAAACCATACCTGTGCCAGCA
CCCAGGCTGCCAGAAGGCCTTCAGCAACTCCAGCGACCGTGCCAAGCACCAACGCACCCACCTCGACACG
AAGCCATATGCTTGTCAGATCCCTGGCTGCTCCAAGCGCTACACGGACCCCAGCTCCCTCCGCAAGCACG
TGAAGGCCCACTCAGCCAAAGAGCAGCAGGTGCGTAAGAAGCTGCACACAGGTGCCGACCCAGAGGCTGA
TGTTCTGTCCGAGTGTCTGTCCCTGCAGCAGCTCCAAGCATCCACACTGTTGCCGGCCAGCAGAGGGAAG
GGCAGCCAAACCCTGAGCCAGGAGCTCCTCCCAGGTGTGTATCCTGGCTCCGTCACCCCACAAAACGGGC
TTGCTTCAGGCATCCTGTCCCCCTCCCACGATGTCCCTTCCAGGCACCACCCACTGGAGGTCCCCACTGG
TTCCCACCACCACCTGTCCCCTCTGCCCACAGCTGAGAGCACCAGGGATGGCCTGGGGCCCAGTCTCCTT
TCACCCATGGTCAGCCCACTGAAGGGGCTTGGTCCCCCACCGCTACCACCAGCCTCCCAGAGTCAGTCTC
CAGGGGGACAGTCATTCTCTACAGTCCCCAGCAAGCCTACCTACCCATCCTTCCAAAGCCCACCACCTCT
GCCCAGCCCCCAAGGCTACCAAGGCAGTTTCCATTCCATCCAGAACTGCTTCCCCTACGCTGACTGCTAC
CGGGCCACTGAGCCAGCAGCCTCCAGGGATGGACTGGTGGGTGATGCCCACGGTTTCAACCCCTTGCGAC
CCAGCACATACTCCAGCCTCAGCACACCTTTATCCGCACCAGGCTACGAGACCCTGGCAGAAACGCCGTG
TCCCCCAGCGCTGCAGCCACAGCCAGCTGAAGACCTGGTACCTAGTGGTCCTGAGGACTGTGGCTTCTTC
CCCAATGGGGCCTTTGACCACTGTCTGAGTCACATCCCGTCCATCTACACTGACACCTGA

Translation (789 aa):
MHCEVAEALSDKRPKEAPGAPGQGRGPVSLGAHMAFRIAVSGGGCGDGNPLDLLPRLPVPPPRAHDLLRP
RSPRDYGVSKTGSGKVNGSYGHSSEKSLLDLDLAEGPSPSCHQGLFLPAGTPPPRGHPPVCEKLLHFPHP
NRSPRPQATFVNGSLPAAQHIKQEALPDYQAMVSAHTPLPTHCRAPSSMGLPSDLDFPDRGLTNPAPSCY
LLGNEPISDLGPQPEAHLPEGSLKRCCLLGLPPTSSASSSPCASSDINPVIHSSQTALVSCVNGLRSPPL
PGDLGGPPKRSRPGPASSDGQEGSLQLEACRKSGFLKQEPMDEFSELFAPHHQGLPPPYPLPQLPTGPGL
GGLGLGLAGRMVAGRQACRWVDCCAAYEQQEELVRHIEKSHIDQRKGEDFTCFWAGCVRRYKPFNARYKL
LIHMRVHSGEKPNKCMFEGCSKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRTHLDT
KPYACQIPGCSKRYTDPSSLRKHVKAHSAKEQQVRKKLHTGADPEADVLSECLSLQQLQASTLLPASRGK
GSQTLSQELLPGVYPGSVTPQNGLASGILSPSHDVPSRHHPLEVPTGSHHHLSPLPTAESTRDGLGPSLL
SPMVSPLKGLGPPPLPPASQSQSPGGQSFSTVPSKPTYPSFQSPPPLPSPQGYQGSFHSIQNCFPYADCY
RATEPAASRDGLVGDAHGFNPLRPSTYSSLSTPLSAPGYETLAETPCPPALQPQPAEDLVPSGPEDCGFF
PNGAFDHCLSHIPSIYTDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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