NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37585.1 Public Mus musculus 17 Btnl2 23 108 98 CCDS HistoryNCBI Gene:547431Re-query CCDS DB by CCDS ID:37585.1Re-query CCDS DB by GeneID:547431See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025198.14 ENSMUSP00000025198.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025198.14Link to Ensembl Protein Viewer:ENSMUSP00000025198.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025198Re-query CCDS DB by Protein ID:ENSMUSP00000025198
Original member Current member NCBI NM_079835.2 NP_524574.1 Accepted alive Link to Nucleotide Sequence:NM_079835.2Link to Protein Sequence:NP_524574.1Re-query CCDS DB by Nucleotide ID:NM_079835Re-query CCDS DB by Protein ID:NP_524574Link to BLAST:NP_524574.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_524574.1 514 O70355-2 514 100% 0 0

Chromosomal Locations for CCDS 37585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34356222 34356300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34357952 34358299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34360922 34361203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34362659 34362679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34363192 34363539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34365183 34365461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34366384 34366485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34368643 34368728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGTGGATTGCCCACGGTATAGTCTATCTGGCGTGGCTGCCTCCTTCCTCTTCGTCCTGCTGACTATAA
AGCACCCAGATGACTTCAGAGTGGTCGGTCCTAACCTCCCAATCTTGGCTAAAGTCGGGGAAGATGCCCT
GCTAACGTGTCAGCTCCTCCCCAAGAGGACCACGGCACACATGGAGGTGAGGTGGTACCGCTCCGACCCT
GACATGCCAGTGATTATGTACCGGGATGGAGCTGAGGTGACTGGGCTACCGATGGAGGGGTACGGAGGCC
GGGCAGAGTGGATGGAGGACAGCACTGAAGAGGGCAGTGTGGCTCTGAAGATTCGCCAGGTCCAGCCAAG
TGACGATGGCCAGTACTGGTGCCGCTTCCAGGAGGGGGACTACTGGAGAGAGACAAGCGTGCTACTCCAA
GTGGCTGCTCTAGGATCTTCCCCAAATATCCATGTGGAGGGACTCGGAGAAGGAGAGGTCCAGCTTGTAT
GCACGTCCCGAGGCTGGTTCCCTGAGCCTGAGGTGCACTGGGAAGGCATCTGGGGAGAAAAGTTGATGAG
TTTCTCTGAGAATCATGTGCCAGGTGAAGATGGGCTATTCTATGTGGAAGACACACTGATGGTCAGGAAT
GACAGTGTAGAGACCATTTCCTGCTTCATCTACAGCCATGGCCTCAGAGAGACCCAGGAGGCCACCATCG
CTCTGTCAGAGAGGCTCCAGACCGAACTGGCTTCCGTTAGCGTAATCGGACATTCCCAGCCCAGCCCTGT
TCAAGTCGGAGAGAACATAGAATTAACTTGTCACCTCTCACCTCAAACGGATGCTCAGAACTTAGAGGTG
AGGTGGCTCCGATCCCGCTATTACCCTGCAGTCCACGTGTATGCAAATGGCACCCACGTGGCTGGAGAGC
AGATGGTAGAATACAAAGGGAGGACTTCATTGGTGACTGATGCCATCCACGAGGGAAAACTGACCCTGCA
AATTCACAATGCCAGAACTTCGGATGAAGGGCAGTACCGGTGCCTTTTTGGAAAAGATGGTGTCTACCAG
GAGGCCCGTGTGGATGTGCAGGTGATGGCGGTGGGTTCCACCCCACGGATCACCAGGGAGGTCTTGAAAG
ATGGAGGCATGCAGCTGAGGTGTACGTCTGATGGGTGGTTCCCACGGCCCCATGTGCAGTGGAGGGACAG
AGATGGAAAGACAATGCCATCGTTTTCCGAGGCCTTTCAGCAAGGGAGCCAGGAGCTGTTCCAGGTGGAG
ACACTTCTGCTGGTCACAAACGGCTCCATGGTGAATGTGACCTGCTCCATCAGCCTCCCTCTGGGCCAGG
AGAAAACAGCCCGTTTCCCTCTCTCAGACTCCAAGATAGCTTTGCTATGGATGACCCTGCCTGTTGTGGT
GCTGCCTCTGGCCATGGCTATCGACCTGATCAAGGTGAAACGGTGGCGGCGGACCAATGAACAAACACAC
AGCAGCAATCAGGAAAATAACAAGAATGACGAAAACCACAGGCGGCGACTTCCTTCTGATGAGAGGCTCA
GATGA

Translation (514 aa):
MVDCPRYSLSGVAASFLFVLLTIKHPDDFRVVGPNLPILAKVGEDALLTCQLLPKRTTAHMEVRWYRSDP
DMPVIMYRDGAEVTGLPMEGYGGRAEWMEDSTEEGSVALKIRQVQPSDDGQYWCRFQEGDYWRETSVLLQ
VAALGSSPNIHVEGLGEGEVQLVCTSRGWFPEPEVHWEGIWGEKLMSFSENHVPGEDGLFYVEDTLMVRN
DSVETISCFIYSHGLRETQEATIALSERLQTELASVSVIGHSQPSPVQVGENIELTCHLSPQTDAQNLEV
RWLRSRYYPAVHVYANGTHVAGEQMVEYKGRTSLVTDAIHEGKLTLQIHNARTSDEGQYRCLFGKDGVYQ
EARVDVQVMAVGSTPRITREVLKDGGMQLRCTSDGWFPRPHVQWRDRDGKTMPSFSEAFQQGSQELFQVE
TLLLVTNGSMVNVTCSISLPLGQEKTARFPLSDSKIALLWMTLPVVVLPLAMAIDLIKVKRWRRTNEQTH
SSNQENNKNDENHRRRLPSDERLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH