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Report for CCDS36854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36854.1 Public Mus musculus 14 Tnnc1 23 108 98 CCDS HistoryNCBI Gene:21924Re-query CCDS DB by CCDS ID:36854.1Re-query CCDS DB by GeneID:21924See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169169.7 ENSMUSP00000131991.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169169.7Link to Ensembl Protein Viewer:ENSMUSP00000131991.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169169Re-query CCDS DB by Protein ID:ENSMUSP00000131991
Original member NCBI NM_009393.3 NP_033419.1 Updated not alive Link to Nucleotide Sequence:NM_009393.3Link to Protein Sequence:NP_033419.1Re-query CCDS DB by Nucleotide ID:NM_009393Re-query CCDS DB by Protein ID:NP_033419
Current member NCBI NM_009393.4 NP_033419.1 Accepted alive Link to Nucleotide Sequence:NM_009393.4Link to Protein Sequence:NP_033419.1Re-query CCDS DB by Nucleotide ID:NM_009393Re-query CCDS DB by Protein ID:NP_033419Link to BLAST:NP_033419.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033419.1 161 P19123 161 100% 0 0

Chromosomal Locations for CCDS 36854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31208355 31208378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31209803 31209833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31210060 31210206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31210564 31210678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31211280 31211416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31211506 31211537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGATGACATCTACAAAGCTGCGGTAGAACAGTTGACAGAGGAGCAGAAGAATGAGTTCAAGGCTGCCT
TTGATATCTTTGTCCTGGGCGCGGAGGATGGCTGCATCAGCACCAAGGAGCTGGGCAAGGTGATGAGGAT
GCTGGGCCAGAACCCCACACCTGAGGAGCTGCAGGAGATGATTGACGAAGTAGACGAGGATGGCAGTGGC
ACAGTGGACTTCGATGAGTTTCTTGTCATGATGGTTCGGTGCATGAAGGACGACAGCAAAGGGAAGTCTG
AGGAGGAGCTGTCGGATCTCTTCCGCATGTTTGACAAAAACGCTGATGGCTACATTGACTTAGATGAGCT
GAAGATGATGCTGCAGGCCACAGGTGAGACCATTACGGAAGATGACATTGAAGAGCTCATGAAGGACGGT
GACAAGAACAACGATGGCCGAATTGACTATGACGAGTTCCTGGAATTCATGAAGGGTGTGGAGTAG

Translation (161 aa):
MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSG
TVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDG
DKNNDGRIDYDEFLEFMKGVE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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