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Report for CCDS35894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35894.1 Public Mus musculus 10 Qrsl1 23 108 98 CCDS HistoryNCBI Gene:76563Re-query CCDS DB by CCDS ID:35894.1Re-query CCDS DB by GeneID:76563See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020012.6 ENSMUSP00000020012.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020012.6Link to Ensembl Protein Viewer:ENSMUSP00000020012.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020012Re-query CCDS DB by Protein ID:ENSMUSP00000020012
Original member Current member NCBI NM_001081054.2 NP_001074523.1 Accepted alive Link to Nucleotide Sequence:NM_001081054.2Link to Protein Sequence:NP_001074523.1Re-query CCDS DB by Nucleotide ID:NM_001081054Re-query CCDS DB by Protein ID:NP_001074523Link to BLAST:NP_001074523.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074523.1 525 Q9CZN8 525 100% 0 0

Chromosomal Locations for CCDS 35894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43874483 43874706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43876472 43876677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43881473 43881590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43882066 43882258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43884749 43884861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43884943 43885118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43888969 43889136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43894515 43894611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43895434 43895532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43896009 43896168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43901614 43901637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGCTGGGCCGGACTCTCCGAGAAGTTTCTGCGGCACTGAAGCAGGGCCAGGTTACACCAACAGAGCTCT
GCAAGAACTGTCTCTCCCTCATCAAGAAAACCAAGTATCTAAATGCTTACATTACTGTATCAGAAGAGGT
CGCTTTAAAGCAAGCTGAAGAATCAGAGAAAAGATACAAGCAAGGTCAGTCTCTTGGAGATTTAGATGGA
ATTCCTGTTGCTGTGAAAGACAACTTTAGCACAACTGGCATTGAGACAACATGTGCATCAAATATGTTAA
AAGGTTACGTACCACCTTACAATGCTACAGTAGTTCAGAAGCTGTTGGATCAGGGTGCCCTACTCATGGG
GAAAACAAATTTAGATGAGTTTGCTATGGGGTCTGGAAGCACAGATGGTGTGTTTGGGCCAGTTAGAAAC
CCCTGGACTTACTCGAAGCAGTACAGAGAGAGAAGCCGGCAGGATGCAGGTGATGATTCCCACTGGCTGA
TCACTGGCGGAAGCTCGGGCGGCAGCGCAGCAGCCGTGGCCGCGTTCACCTGCTTTGCGGCTCTCGGATC
GGACACTGGTGGGTCCACCAGGAACCCTGCTGCCCACTGTGGGATTGTTGGTTTCAAACCAAGCTATGGC
TTGGTTTCACGGCACGGCCTTATTCCCCTGGTGAATTCAATGGACGTGCCAGGAATCCTCACCAGATGTG
TGGACGACACAGCAATTGTGTTAGGTACACTGGCTGGACATGACCCCAAAGATTCCACCACAGTGAGAAA
CCCTGCTCAGCCGGCCTCGGTTCCCGGCGGGATGGATGTGAGCAGGCTGTGTATAGGAATCCCAAAGGAA
TATCTAGTACCAGAATTGTCAAGTGAAGTACGGTCTCTCTGGTCCCAAGCTGCTGACCTCTTTGAGTCTG
AAGGAGCCAAAGTGATTGAGGTGTCTCTGCCACACACCTGTTACTCAATTGTCTGCTACCATGTCCTGTG
CACATCAGAAGTAGCATCGAATATGGCAAGATTTGATGGGCTCCAGTATGGTCATAGGTCTGGTGTTGAT
GTGTCCACTGAAGCCATGTACGCCGCAACCAGACAGGAAGGCTTCAATGATGTGGTGAGAGGAAGAATTC
TCTCAGGAAACTTTTTCTTATTAAAAGAAAATTATGAGAATTATTTCGTCAAGGCACAGAAAGTGAGGCG
CCTCATTGTGAAGGATTTTGTGGATGTTTTTGAGTCTGGGGTGGATGTCCTGCTAACCCCCACCACCCTG
ACTGAGGCAGTGCCGTACCTGGAGTTCATCAAAGAAGACAACAGGACACGCAGCGCCCAGGATGATATTT
TCACTCAAGCTGTCAATATGGCAGGCTTGCCAGCAGTGAGTGTCCCTGTGGCCCTCTCAAACCAAGGGCT
GCCAATAGGACTGCAGTTAATTGGACGTGCATTTTGTGACCAGCAACTTCTGACAGTTGCCAAGTGGTTT
GAAAAACAAGTACAGTTTCCTGTTATTCAACTGCAGGGCCTCATGGATGATGGCTCGTTGGTTCTTGAAA
ATGGAAAGTTAACGTCTGCTTCTCTGACCCAGAGATGA

Translation (525 aa):
MLGRTLREVSAALKQGQVTPTELCKNCLSLIKKTKYLNAYITVSEEVALKQAEESEKRYKQGQSLGDLDG
IPVAVKDNFSTTGIETTCASNMLKGYVPPYNATVVQKLLDQGALLMGKTNLDEFAMGSGSTDGVFGPVRN
PWTYSKQYRERSRQDAGDDSHWLITGGSSGGSAAAVAAFTCFAALGSDTGGSTRNPAAHCGIVGFKPSYG
LVSRHGLIPLVNSMDVPGILTRCVDDTAIVLGTLAGHDPKDSTTVRNPAQPASVPGGMDVSRLCIGIPKE
YLVPELSSEVRSLWSQAADLFESEGAKVIEVSLPHTCYSIVCYHVLCTSEVASNMARFDGLQYGHRSGVD
VSTEAMYAATRQEGFNDVVRGRILSGNFFLLKENYENYFVKAQKVRRLIVKDFVDVFESGVDVLLTPTTL
TEAVPYLEFIKEDNRTRSAQDDIFTQAVNMAGLPAVSVPVALSNQGLPIGLQLIGRAFCDQQLLTVAKWF
EKQVQFPVIQLQGLMDDGSLVLENGKLTSASLTQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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