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Report for CCDS35539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35539.1 Public Mus musculus 1 Inpp4a 23 108 98 CCDS HistoryNCBI Gene:269180Re-query CCDS DB by CCDS ID:35539.1Re-query CCDS DB by GeneID:269180See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027287.10 ENSMUSP00000027287.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027287.10Link to Ensembl Protein Viewer:ENSMUSP00000027287.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027287Re-query CCDS DB by Protein ID:ENSMUSP00000027287
Original member Current member NCBI NM_030266.4 NP_084542.2 Accepted alive Link to Nucleotide Sequence:NM_030266.4Link to Protein Sequence:NP_084542.2Re-query CCDS DB by Nucleotide ID:NM_030266Re-query CCDS DB by Protein ID:NP_084542Link to BLAST:NP_084542.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084542.2 939 Q9EPW0-1 939 98.935% 0 10

Chromosomal Locations for CCDS 35539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37357919 37358024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37358508 37358552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37364110 37364228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37366163 37366279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37366539 37366618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37366870 37366981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37367757 37367847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37368277 37368424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37369358 37369488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37371702 37371806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37372311 37372419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37374272 37374289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37377578 37377761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37378841 37379059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37379922 37380060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37383339 37383371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37387698 37387870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37388787 37388910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37389650 37389776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37390049 37390189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37392943 37393040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37396070 37396182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37398766 37398920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37408127 37408259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2820 nt):
ATGACAGCAAGAGAGCACAGCCCTCGCCATGGTGCCAGGGCCCGTGCGATGCAGCGGGCTTCCACCATTG
ACGTGGCAGCCGACATGGTTGGCCTCTCTTTGGCAGGAAATATCCAAGATCCAGATGAGCCCATTTTAGA
ATTCAGCTTAGCTTGCAGTGAGCTGCACACTCCATCGCTAGATCGAAAACCAAATAGTTTTGTGGCTGTG
AGTGTCACCACCCCTCCGCAGGCGTTCTGGACGAAGCACGCACAGACGGAGATCATCGAGGGAACCAACA
ACCCTATCTTTCTAAGCAGCATTGCCTTCTTTCAAGACTCCCTTATCAATCAGATGACCCAGATCAAGCT
GTCTGTGTATGATGTCAAAGACAGATCTCAGGGAACAATGTACTTACTGGGCTCTGGAACATTCGTGGTC
AAAGATCTGCTCCAGGACAGGCATCACAGATTGCATCTGACACTGAGGTCTGCAGAGAGTGACCGTGTCG
GCAACATAACTGTGATCGGCTGGCAGATGGAGGAGAAGTCCGACCAGCAGCCCCCTGTGACCCGGTCTCT
GGACACTGTCAATGGAAGGATGGTTCTGCCCGTTGATGAAAGCTTGACTGAGGCCTTGGGAATCCGATCC
AAATATGCTTCTTTGCGAAAAGACAGCTTACTGAAAGCAGTGTTTGGTGGTGCCATCTGCCGCATGTACC
GCTTCCCAACTACTGATGGTAACCACCTACGGATCCTGGAGCAGATGGCAGAGAGCGTCCTCTCCCTGCA
CGTGCCTCGGCAGTTTGTGAAGCTACTGCTGGAAGAAGATGCAGCCAGGGTATGTGAGTTGGAAGAGTTG
GGGGAGCTGTCCCCTTGCTGGGAGAGCCTCCGGCGCCAGATTGTCACCCAGTATCAGACTATCATCCTCA
CCTACCAGGAGAATCTGACTGACCTCCATCAGTACAAAGGTCCTTCCTTTAAAGCAAGCAGTTTGAAAGC
AGATAAAAAGTTAGAATTTGTTCCCACAAACCTGCACATACAACGGATGCGAGTTCAAGATGATGGAGGC
TCAGATCAGAACTACGATGTCGTCACTATTGGAGCCCCAGCAGCACACTGCCAAGGTTTTAAGTCAGGAG
GTCTTCGAAAAAAGCTGCACAAGTTTGAAGAGGCCAAGAAACACAGTTTTGAGGAGTGTTGTACATCTTC
TAGTGGCCAGTCCATCATCTACATACCACAGGACATCACCCGAGCCAAGGAGATCATTGCCCAGATCAAC
ACCCTAAAAACCCAGGTCAGCTACTACGCGGAACGGCTCTCAAGGGCTGCGAAGGACAGGTCAGCTACTG
GCCTTGAGAGGACTCTCGCCATCTTGGCAGACAAGACTCGGCAGTTGGTGACTGTCTGTGACTGTAAGCT
GCTGGCCAACTCCATCCATGGGCTGAATGCAGCTCGGCCCGACTACATCGCTTCCAAGGCCTCCCCTACC
TCGACTGAGGAGGAGCAGGTGATGCTTCGGAATGACCAGGACACCCTGATGGCCAGGTGGGCGGGGAGAA
GCAGCCGGTCTTCCCTGCAGGTGGACTGGCATGAGGAGGAGTGGGAGAAAGTGTGGCTGAATGTGGACAA
GAGCCTGGAGTGCATCATTCAGCGGGTGGACAAGCTGCTGCAGAAGGAGCGTCTGCATGGGGAGGGCTGC
GAGGATGCTTTCCCCTGTTCGAGCACCTGCTCCAGCAAGAAAGATTGCAGCCCCCCTCCTGAAGAGTCCA
GTCCAGGTGAGTGGAGCGAGGCCCTTTACCCTCTGCTGACCACCCTCACAGACTGTGTGGCCATGATGAG
CGACAAGGCCAAGGCAGCCATGGTCTTCCTGCTCATGCAGGACAGTGCCCCCACCATTGCCTCGTACCTC
AGCCTGCAGTATCGCCGTGACGTCGTCTTCTGCCAAACCCTGACAGCCCTCATCTGTGGCTTTATCATCA
AGCTGAGGAACTGCCTGCACGACGGTGGCTTCCTGCGGCAGCTCTACACCATCGGCCTTCTGGCCCAGTT
TGAGAGCCTGCTGAGCACCTACGGAGAGGAGTTGGCCATGTTGGAGGACATGAGCCTTGGAATCATGGAC
CTGAGGAATGTGACCTTTAAAGTCACTCAGGCCACTTCGAATGCATCAAATGACATGCTGCCGGTCATCA
CAGGAAACCGGGATGGCTTTAACGTGCGGATCCCTCTGCCAGGCCCACTGTTTGACTCCCTCCCCAGAGA
GATCCAGAGTGGCATGCTGCTGCGGGTGCAGCCTGTCCTCTTCAACGTGGGCATCAATGAGCAACAGACA
CTGGCTGAGAGGTTTGGAGATACGTCCTTACAAGAAGTTATCAATGTGGAGAGCTTGGTGCGGTTAAATT
CCTACTTTGAGCAGTTTAAGGAGGTTTTGCCGGAGGACTGTCTACCTCGATCTCGGAGTCAGACCTGCCT
TCCAGAGCTGCTGCGGTTCCTGGGACAGAATGTCCATGCACGCAAGAATAAGAATGTGGACATCCTCTGG
CAAGCTGCTGAGGTCTGTCGCCGCCTTAACGGGGTCCGATTCACCAGCTGCAAGAGTGCCAAGGACCGCA
CAGCCATGTCGGTGACCCTGGAGCAGTGTCTGATCCTGCAGCACGAGCACGGCATGGCCCCGCAGGTCTT
CACACAAGCCCTGGAGTGCATGCGCAGTGAGGGTTGTCGGCGAGAAAACACAATGAAGAATGTTGGAAGT
CGCAAATATGCATTTAACTCCCTGCAGCTGAAGGCCTTCCCCAAGCATTACAGGCCTCCAGAAGGGACTT
ACGGAAAAGTTGAGACATGA

Translation (939 aa):
MTAREHSPRHGARARAMQRASTIDVAADMVGLSLAGNIQDPDEPILEFSLACSELHTPSLDRKPNSFVAV
SVTTPPQAFWTKHAQTEIIEGTNNPIFLSSIAFFQDSLINQMTQIKLSVYDVKDRSQGTMYLLGSGTFVV
KDLLQDRHHRLHLTLRSAESDRVGNITVIGWQMEEKSDQQPPVTRSLDTVNGRMVLPVDESLTEALGIRS
KYASLRKDSLLKAVFGGAICRMYRFPTTDGNHLRILEQMAESVLSLHVPRQFVKLLLEEDAARVCELEEL
GELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSLKADKKLEFVPTNLHIQRMRVQDDGG
SDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEAKKHSFEECCTSSSGQSIIYIPQDITRAKEIIAQIN
TLKTQVSYYAERLSRAAKDRSATGLERTLAILADKTRQLVTVCDCKLLANSIHGLNAARPDYIASKASPT
STEEEQVMLRNDQDTLMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQRVDKLLQKERLHGEGC
EDAFPCSSTCSSKKDCSPPPEESSPGEWSEALYPLLTTLTDCVAMMSDKAKAAMVFLLMQDSAPTIASYL
SLQYRRDVVFCQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYGEELAMLEDMSLGIMD
LRNVTFKVTQATSNASNDMLPVITGNRDGFNVRIPLPGPLFDSLPREIQSGMLLRVQPVLFNVGINEQQT
LAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPEDCLPRSRSQTCLPELLRFLGQNVHARKNKNVDILW
QAAEVCRRLNGVRFTSCKSAKDRTAMSVTLEQCLILQHEHGMAPQVFTQALECMRSEGCRRENTMKNVGS
RKYAFNSLQLKAFPKHYRPPEGTYGKVET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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