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Report for CCDS35214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35214.1 Public Homo sapiens X DDX53 24 110 108 CCDS HistoryNCBI Gene:168400Re-query CCDS DB by CCDS ID:35214.1Re-query CCDS DB by GeneID:168400See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327968.7 ENSP00000368667.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327968.7Link to Ensembl Protein Viewer:ENSP00000368667.2Re-query CCDS DB by Nucleotide ID:ENST00000327968Re-query CCDS DB by Protein ID:ENSP00000368667
Original member Current member NCBI NM_182699.4 NP_874358.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182699.4Link to Protein Sequence:NP_874358.2Re-query CCDS DB by Nucleotide ID:NM_182699Re-query CCDS DB by Protein ID:NP_874358Link to BLAST:NP_874358.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_874358.2 631 Q86TM3 631 100% 0 0

Chromosomal Locations for CCDS 35214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 23000058 23001953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGTCCCACTGGGCCCCAGAGTGGAAGAGGGCGGAGGCTAATCCAAGAGACCTTGGGGCCAGCTGGGATG
TC
AGGGGCAGCAGAGGCAGTGGCTGGAGTGGCCCCTTCGGCCATCAGGGACCGAGAGCAGCAGGCTCCCG
T
GAACCACCACTCTGCTTTAAAATAAAGAACAATATGGTTGGTGTGGTCATTGGTTACAGTGGATCAAAA
ATA
AAAGATCTACAACATTCGACAAACACTAAAATACAGATCATAAACGGGGAATCTGAAGCAAAAGTCA
GA
ATTTTTGGCAATAGGGAAATGAAAGCAAAGGCCAAAGCGGCTATAGAAACACTTATTAGAAAACAAGA
A
AGCTACAACTCAGAATCCAGTGTGGATAATGCTGCATCCCAAACCCCTATTGGAAGAAATCTAGGCAGA
AAT
GACATTGTTGGAGAAGCTGAGCCATTGTCAAATTGGGATCGCATTAGGGCAGCAGTCGTGGAGTGCG
AA
AAGAGAAAATGGGCAGATCTACCACCAGTTAAGAAAAACTTTTACATAGAATCCAAAGCAACAAGCTG
C
ATGTCTGAAATGCAGGTGATTAACTGGAGAAAGGAAAATTTCAACATAACGTGTGATGACTTGAAAAGT
GGT
GAAAAGCGTCTCATTCCAAAACCAACTTGCAGGTTTAAAGACGCTTTTCAGCAATACCCTGATCTTC
TG
AAAAGCATAATAAGGGTAGGGATTGTAAAGCCAACGCCAATTCAGTCACAGGCATGGCCAATTATTCT
A
CAAGGAATAGATCTTATAGTAGTTGCACAAACCGGAACAGGGAAAACATTGTCCTATCTAATGCCTGGG
TTT
ATTCATCTTGATTCTCAACCAATATCTAGAGAGCAAAGGAATGGGCCTGGGATGCTAGTCCTTACAC
CC
ACTAGAGAGTTGGCTCTTCACGTGGAAGCTGAATGTTCAAAGTATTCATATAAAGGTCTCAAAAGCAT
T
TGCATATATGGTGGTAGAAACAGAAATGGACAAATAGAAGACATTAGCAAAGGTGTAGATATCATTATT
GCA
ACTCCTGGGAGGCTGAATGACCTACAAATGAATAACTCTGTCAACCTAAGAAGCATAACCTACTTGG
TT
ATAGATGAGGCAGATAAAATGCTGGATATGGAATTTGAACCCCAGATAAGGAAGATTTTATTAGATGT
G
CGCCCAGACCGACAGACTGTTATGACAAGTGCAACTTGGCCAGATACTGTACGTCAACTAGCACTTTCT
TAT
TTGAAAGATCCTATGATTGTTTATGTTGGTAATCTGAATCTAGTGGCTGTAAATACAGTGAAGCAAA
AT
ATAATTGTTACCACAGAAAAAGAAAAACGAGCTCTCACCCAAGAATTCGTAGAGAACATGTCACCCAA
C
GACAAAGTCATCATGTTTGTCAGCCAAAAACATATTGCTGATGACTTGTCAAGCGACTTCAATATCCAA
GGC
ATATCTGCAGAATCATTACATGGCAACAGTGAACAGAGTGATCAAGAGCGAGCAGTAGAGGACTTTA
AA
AGCGGAAACATAAAGATACTGATTACAACTGATATAGTATCCCGAGGTCTTGATCTTAATGATGTCAC
A
CATGTATATAATTATGATTTCCCAAGGAATATTGACGTATATGTACACAGAGTAGGGTACATTGGACGG
ACA
GGAAAGACTGGCACATCAGTTACCCTCATCACTCAGAGAGATTCGAAAATGGCCGGTGAATTGATTA
AA
ATTCTGGACAGAGCAAATCAGAGTGTTCCGGAAGATCTTGTAGTAATGGCTGAGCAATACAAGTTAAA
T
CAACAAAAGAGGCACAGAGAAACACGATCAAGAAAACCTGGACAAAGACGCAAGGAGTTTTATTTTTTA
AGT
TGA


Translation (631 aa):
MSHWAPEWKRAEANPRDLGASWDVRGSRGSGWSGPFGHQGPRAAGSREPPLCFKIKNNMVGVVIGYSGSK
I
KDLQHSTNTKIQIINGESEAKVRIFGNREMKAKAKAAIETLIRKQESYNSESSVDNAASQTPIGRNLGR
N
DIVGEAEPLSNWDRIRAAVVECEKRKWADLPPVKKNFYIESKATSCMSEMQVINWRKENFNITCDDLKS
G
EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPG
F
IHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIII
A
TPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALS
Y
LKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQ
G
ISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGR
T
GKTGTSVTLITQRDSKMAGELIKILDRANQSVPEDLVVMAEQYKLNQQKRHRETRSRKPGQRRKEFYFL
S




Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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