NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34780.1 Public Homo sapiens 7 SMARCD3 24 110 108 CCDS HistoryNCBI Gene:6604Re-query CCDS DB by CCDS ID:34780.1Re-query CCDS DB by GeneID:6604See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262188.13 ENSP00000262188.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262188.13Link to Ensembl Protein Viewer:ENSP00000262188.8Re-query CCDS DB by Nucleotide ID:ENST00000262188Re-query CCDS DB by Protein ID:ENSP00000262188
Original member Current member NCBI NM_001003801.2 NP_001003801.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001003801.2Link to Protein Sequence:NP_001003801.1Re-query CCDS DB by Nucleotide ID:NM_001003801Re-query CCDS DB by Protein ID:NP_001003801Link to BLAST:NP_001003801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003801.1 483 Q6STE5-1 483 100% 0 0

Chromosomal Locations for CCDS 34780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151239103 151239156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151239396 151239497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151239624 151239746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151240112 151240247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151240425 151240522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151241492 151241653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151241877 151241978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151242137 151242232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151242481 151242603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151242721 151242843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151243659 151243701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151245460 151245671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151248485 151248562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGCCGCGGACGAAGTTGCCGGAGGGGCGCGCAAAGCCACGAAAAGCAAACTTTTTGAGTTTCTGGTCC
ATGGGGTGCGCCCCGGGATGCCGTCTGGAGCCCGGATGCCCCACCAGGGGGCGCCCATGGGCCCCCCGGG
CTCCCCGTACATGGGCAGCCCCGCCGTGCGACCCGGCCTGGCCCCCGCGGGCATGGAGCCCGCCCGCAAG
CGAGCAGCGCCCCCGCCCGGGCAGAGCCAGGCACAGAGCCAGGGCCAGCCGGTGCCCACCGCCCCCGCGC
GGAGCCGCAGTGCCAAGAGGAGGAAGATGGCTGACAAAATCCTCCCTCAAAGGATTCGGGAGCTGGTCCC
CGAGTCCCAGGCTTACATGGACCTCTTGGCATTTGAGAGGAAACTGGATCAAACCATCATGCGGAAGCGG
GTGGACATCCAGGAGGCTCTGAAGAGGCCCATGAAGCAAAAGCGGAAGCTGCGACTCTATATCTCCAACA
CTTTTAACCCTGCGAAGCCTGATGCTGAGGATTCCGACGGCAGCATTGCCTCCTGGGAGCTACGGGTGGA
GGGGAAGCTCCTGGATGATCCCAGCAAACAGAAGCGGAAGTTCTCTTCTTTCTTCAAGAGTTTGGTCATC
GAGCTGGACAAAGATCTTTATGGCCCTGACAACCACCTCGTTGAGTGGCATCGGACACCCACGACCCAGG
AGACGGACGGCTTCCAGGTGAAACGGCCTGGGGACCTGAGTGTGCGCTGCACGCTGCTCCTCATGCTGGA
CTACCAGCCTCCCCAGTTCAAACTGGATCCCCGCCTAGCCCGGCTGCTGGGGCTGCACACACAGAGCCGC
TCAGCCATTGTCCAGGCCCTGTGGCAGTATGTGAAGACCAACAGGCTGCAGGACTCCCATGACAAGGAAT
ACATCAATGGGGACAAGTATTTCCAGCAGATTTTTGATTGTCCCCGGCTGAAGTTTTCTGAGATTCCCCA
GCGCCTCACAGCCCTGCTATTGCCCCCTGACCCAATTGTCATCAACCATGTCATCAGCGTGGACCCTTCA
GACCAGAAGAAGACGGCGTGCTATGACATTGACGTGGAGGTGGAGGAGCCATTAAAGGGGCAGATGAGCA
GCTTCCTCCTATCCACGGCCAACCAGCAGGAGATCAGTGCTCTGGACAGTAAGATCCATGAGACGATTGA
GTCCATAAACCAGCTCAAGATCCAGAGGGACTTCATGCTAAGCTTCTCCAGAGACCCCAAAGGCTATGTC
CAAGACCTGCTCCGCTCCCAGAGCCGGGACCTCAAGGTGATGACAGATGTAGCCGGCAACCCTGAAGAGG
AGCGCCGGGCTGAGTTCTACCACCAGCCCTGGTCCCAGGAGGCCGTCAGTCGCTACTTCTACTGCAAGAT
CCAGCAGCGCAGGCAGGAGCTGGAGCAGTCGCTGGTTGTGCGCAACACCTAG

Translation (483 aa):
MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARK
RAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR
VDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFKSLVI
ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSR
SAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPS
DQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH