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Report for CCDS34419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34419.1 Public Homo sapiens 6 GPSM3 24 110 108 CCDS HistoryNCBI Gene:63940Re-query CCDS DB by CCDS ID:34419.1Re-query CCDS DB by GeneID:63940See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375040.8 ENSP00000364180.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375040.8Link to Ensembl Protein Viewer:ENSP00000364180.3Re-query CCDS DB by Nucleotide ID:ENST00000375040Re-query CCDS DB by Protein ID:ENSP00000364180
Original member Current member EBI ENST00000375043.3 ENSP00000364183.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375043.3Link to Ensembl Protein Viewer:ENSP00000364183.3Re-query CCDS DB by Nucleotide ID:ENST00000375043Re-query CCDS DB by Protein ID:ENSP00000364183
Original member Current member NCBI NM_001276501.2 NP_001263430.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001276501.2Link to Protein Sequence:NP_001263430.1Re-query CCDS DB by Nucleotide ID:NM_001276501Re-query CCDS DB by Protein ID:NP_001263430Link to BLAST:NP_001263430.1
Original member Current member NCBI NM_022107.3 NP_071390.1 Accepted alive Link to Nucleotide Sequence:NM_022107.3Link to Protein Sequence:NP_071390.1Re-query CCDS DB by Nucleotide ID:NM_022107Re-query CCDS DB by Protein ID:NP_071390Link to BLAST:NP_071390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263430.1 160 Q9Y4H4 160 100% 0 0
NP_071390.1 160 Q9Y4H4 160 100% 0 0

Chromosomal Locations for CCDS 34419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 32191366 32191503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32191709 32191908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32192148 32192250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32192472 32192513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGAGGCTGAGAGACCCCAGGAAGAAGAGGATGGTGAGCAGGGCCCCCCTCAGGATGAGGAAGGCTGGC
CCCCTCCAAACTCCACCACTCGGCCTTGGCGATCTGCTCCTCCATCCCCTCCTCCTCCAGGGACCCGCCA
CACAGCCCTGGGACCCCGCTCGGCCTCCCTGCTCTCCCTGCAGACTGAACTCCTTCTGGACCTGGTGGCT
GAAGCCCAGTCCCGCCGCCTGGAGGAGCAGAGGGCCACCTTCTACACCCCCCAAAACCCCTCAAGCCTAG
CCCCTGCCCCACTCCGTCCTCTCGAGGACAGAGAACAGCTTTACAGCACTATCCTCAGTCACCAGTGCCA
GCGGATGGAAGCCCAGCGGTCAGAGCCTCCCCTCCCTCCAGGGGGGCAAGAGCTCCTGGAGTTGCTGCTG
AGAGTTCAGGGTGGGGGTCGAATGGAGGAGCAAAGGTCCCGGCCCCCCACACACACCTGCTGA

Translation (160 aa):
MEAERPQEEEDGEQGPPQDEEGWPPPNSTTRPWRSAPPSPPPPGTRHTALGPRSASLLSLQTELLLDLVA
EAQSRRLEEQRATFYTPQNPSSLAPAPLRPLEDREQLYSTILSHQCQRMEAQRSEPPLPPGGQELLELLL
RVQGGGRMEEQRSRPPTHTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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