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Report for CCDS34154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34154.1 Public Homo sapiens 5 HMGCS1 24 110 108 CCDS HistoryNCBI Gene:3157Re-query CCDS DB by CCDS ID:34154.1Re-query CCDS DB by GeneID:3157See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34154.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325110.11 ENSP00000322706.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325110.11Link to Ensembl Protein Viewer:ENSP00000322706.6Re-query CCDS DB by Nucleotide ID:ENST00000325110Re-query CCDS DB by Protein ID:ENSP00000322706
Original member Current member EBI ENST00000433297.2 ENSP00000399402.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433297.2Link to Ensembl Protein Viewer:ENSP00000399402.2Re-query CCDS DB by Nucleotide ID:ENST00000433297Re-query CCDS DB by Protein ID:ENSP00000399402
Original member Current member NCBI NM_001098272.3 NP_001091742.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098272.3Link to Protein Sequence:NP_001091742.1Re-query CCDS DB by Nucleotide ID:NM_001098272Re-query CCDS DB by Protein ID:NP_001091742Link to BLAST:NP_001091742.1
Original member Current member NCBI NM_001324219.2 NP_001311148.1 Accepted alive Link to Nucleotide Sequence:NM_001324219.2Link to Protein Sequence:NP_001311148.1Re-query CCDS DB by Nucleotide ID:NM_001324219Re-query CCDS DB by Protein ID:NP_001311148Link to BLAST:NP_001311148.1
Original member Current member NCBI NM_001324220.2 NP_001311149.1 Accepted alive Link to Nucleotide Sequence:NM_001324220.2Link to Protein Sequence:NP_001311149.1Re-query CCDS DB by Nucleotide ID:NM_001324220Re-query CCDS DB by Protein ID:NP_001311149Link to BLAST:NP_001311149.1
Original member Current member NCBI NM_001330663.2 NP_001317592.1 Accepted alive Link to Nucleotide Sequence:NM_001330663.2Link to Protein Sequence:NP_001317592.1Re-query CCDS DB by Nucleotide ID:NM_001330663Re-query CCDS DB by Protein ID:NP_001317592Link to BLAST:NP_001317592.1
Original member Current member NCBI NM_001364188.2 NP_001351117.1 Accepted alive Link to Nucleotide Sequence:NM_001364188.2Link to Protein Sequence:NP_001351117.1Re-query CCDS DB by Nucleotide ID:NM_001364188Re-query CCDS DB by Protein ID:NP_001351117Link to BLAST:NP_001351117.1
Original member Current member NCBI NM_002130.8 NP_002121.4 Accepted alive Link to Nucleotide Sequence:NM_002130.8Link to Protein Sequence:NP_002121.4Re-query CCDS DB by Nucleotide ID:NM_002130Re-query CCDS DB by Protein ID:NP_002121Link to BLAST:NP_002121.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091742.1 520 Q01581 520 100% 0 0
NP_001311148.1 520 Q01581 520 100% 0 0
NP_001311149.1 520 Q01581 520 100% 0 0
NP_001317592.1 520 Q01581 520 100% 0 0
NP_001351117.1 520 Q01581 520 100% 0 0
NP_002121.4 520 Q01581 520 100% 0 0

Chromosomal Locations for CCDS 34154.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43291131 43291220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43292474 43292637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43292848 43292973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43294056 43294162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43294691 43294861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43295752 43295917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43297002 43297166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43298009 43298134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43298518 43298965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGCCTGGATCACTTCCTTTGAATGCAGAAGCTTGCTGGCCAAAAGATGTGGGAATTGTTGCCCTTGAGA
TCTATTTTCCTTCTCAATATGTTGATCAAGCAGAGTTGGAAAAATATGATGGTGTAGATGCTGGAAAGTA
TACCATTGGCTTGGGCCAGGCCAAGATGGGCTTCTGCACAGATAGAGAAGATATTAACTCTCTTTGCATG
ACTGTGGTTCAGAATCTTATGGAGAGAAATAACCTTTCCTATGATTGCATTGGGCGGCTGGAAGTTGGAA
CAGAGACAATCATCGACAAATCAAAGTCTGTGAAGACTAATTTGATGCAGCTGTTTGAAGAGTCTGGGAA
TACAGATATAGAAGGAATCGACACAACTAATGCATGCTATGGAGGCACAGCTGCTGTCTTCAATGCTGTT
AACTGGATTGAGTCCAGCTCTTGGGATGGACGGTATGCCCTGGTAGTTGCAGGAGATATTGCTGTATATG
CCACAGGAAATGCTAGACCTACAGGTGGAGTTGGAGCAGTAGCTCTGCTAATTGGGCCAAATGCTCCTTT
AATTTTTGAACGAGGGCTTCGTGGGACACATATGCAACATGCCTATGATTTTTACAAGCCTGATATGCTA
TCTGAATATCCTATAGTAGATGGAAAACTCTCCATACAGTGCTACCTCAGTGCATTAGACCGCTGCTATT
CTGTCTACTGCAAAAAGATCCATGCCCAGTGGCAGAAAGAGGGAAATGATAAAGATTTTACCTTGAATGA
TTTTGGCTTCATGATCTTTCACTCACCATATTGTAAACTGGTTCAGAAATCTCTAGCTCGGATGTTGCTG
AATGACTTCCTTAATGACCAGAATAGAGATAAAAATAGTATCTATAGTGGCCTGGAAGCCTTTGGGGATG
TTAAATTAGAAGACACCTACTTTGATAGAGATGTGGAGAAGGCATTTATGAAGGCTAGCTCTGAACTCTT
CAGTCAGAAAACAAAGGCATCTTTACTTGTATCAAATCAAAATGGAAATATGTACACATCTTCAGTATAT
GGTTCCCTTGCATCTGTTCTAGCACAGTACTCACCTCAGCAATTAGCAGGGAAGAGAATTGGAGTGTTTT
CTTATGGTTCTGGTTTGGCTGCCACTCTGTACTCTCTTAAAGTCACACAAGATGCTACACCGGGGTCTGC
TCTTGATAAAATAACAGCAAGTTTATGTGATCTTAAATCAAGGCTTGATTCAAGAACTGGTGTGGCACCA
GATGTCTTCGCTGAAAACATGAAGCTCAGAGAGGACACCCATCATTTGGTCAACTATATTCCCCAGGGTT
CAATAGATTCACTCTTTGAAGGAACGTGGTACTTAGTTAGGGTGGATGAAAAGCACAGAAGAACTTACGC
TCGGCGTCCCACTCCAAATGATGACACTTTGGATGAAGGAGTAGGACTTGTGCATTCAAACATAGCAACT
GAGCATATTCCAAGCCCTGCCAAGAAAGTACCAAGACTCCCTGCCACAGCAGCAGAACCTGAAGCAGCTG
TCATTAGTAATGGGGAACATTAA

Translation (520 aa):
MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCM
TVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAV
NWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDML
SEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLL
NDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVY
GSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAP
DVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRPTPNDDTLDEGVGLVHSNIAT
EHIPSPAKKVPRLPATAAEPEAAVISNGEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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