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Report for CCDS30519.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30519.2 Public Mus musculus X Bmx 23 108 98 CCDS HistoryNCBI Gene:12169Re-query CCDS DB by CCDS ID:30519.2Re-query CCDS DB by GeneID:12169See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 30519.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 30519.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112265.8 ENSMUSP00000107884.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112265.8Link to Ensembl Protein Viewer:ENSMUSP00000107884.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112265Re-query CCDS DB by Protein ID:ENSMUSP00000107884
Original member Current member NCBI NM_009759.4 NP_033889.2 Accepted alive Link to Nucleotide Sequence:NM_009759.4Link to Protein Sequence:NP_033889.2Re-query CCDS DB by Nucleotide ID:NM_009759Re-query CCDS DB by Protein ID:NP_033889Link to BLAST:NP_033889.2

Chromosomal Locations for CCDS 30519.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 164193736 164193810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164196895 164197052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164200774 164200892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164203190 164203254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164205168 164205384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164208007 164208178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164208865 164208939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164213482 164213609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164218330 164218409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164220373 164220427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164231202 164231255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164232195 164232266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164234902 164235077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164239363 164239427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164240929 164241048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164246136 164246217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164248083 164248187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164249013 164249159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164258048 164258050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGACGACAATATGGAGAGTAAATCCATTCTGGAAGAACTGCTTCTCAAAAAGTCACAGCAAAAGAAGA
AAATGTCACCAAATAATTACAAGGAGCGGCTTTTTGTTCTAACCAAAACAAGCCTTTCCTACTATGAATA
CGACAAAATGAAAAGAGGAAGCAGAAAAGGATCAATAGAAATTAAGAAAATCAGATGTGTGGAAAAAGTC
AACCTTGAGGAGCAGACACCGGTGGAGAGACAGTACCCATTTCAGATTGTGTATAAAGATGGGCTTCTTT
ATGTCTATGCATCGAATGAAGAGAGCCGATGTCAGTGGTTAAAAGCGCTGCAAAAAGAGATACGGGGCAA
CCCTCACCTGTTGATCAAGTATCACAGTGGCTTCTTTGTGGATGGAAAGTTCCTGTGTTGCCAGCAGAGC
TGCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCATATGCTGATCTGCACATCGCAATCAGTGATGAGA
AACACAGAGCTCCCACTTTCCCAGAGAGGCTACTGAAGATTCCAAGGGCAGTTCCCGTTCTCAAAATGGA
TGCATCATCTTCAGGTGCCATTCTACCCCAATATGACAGCTATTCAAAGAAAAGTTGTGGTTCCCAGCCA
ACCAGCAACATACGCTATATTCCAAGGGAAGACTGCCCTGACTGGTGGCAAGTAAGAAAACTGAAAAGCG
AGGAAGACATTGCATGCAGTAACCAACTGGAAAGAAATATCGCCTCTCACAGCACCTCAAAGATGTCATG
GGGATTCCCTGAGTCAAGTTCATCAGAAGAAGAGGAAAATCTGCATGCTTATGACTGGTTTGCTGGGAAT
ATCTCCAGGTCACAATCTGAGCAGTTACTGAGACAAAAGGGAAAAGAAGGAGCATTTATGGTTCGGAATT
CCAGCCAGATGGGAATGTACACTGTGTCCTTATTTAGTAAGGCTGTAAATGATAAAAAAGGAACTGTCAA
GCATTACCACGTGCATACTAATGCTGAAAATAAATTATACCTGGCTGAAAACTACTGCTTTGATTCCATT
CCAAAGCTCATTCACTATCACCAACATAATTCAGCAGGCATGATCACACGGCTCCGCCACCCAGTGTCAA
CCAAGGCCAACAAGGTCCCGGTGTCTGTGGCTCTGGGAAGTGGAATTTGGGAACTGAAAAGAGAAGAGAT
TACCTTGCTGAAGGAGCTGGGCAATGGCCAGTTTGGAGTGGTCCAGCTGGGCCAGTGGAAGGGGCAATAT
GATGTGGCTGTAAAGATGATCAAGGAGGGTGCCATGTCAGAAGATGAATTCTTTCAGGAGGCCCAGACCA
TGATGAAACTCAGCCATCCCAAGCTGGTGAAGTTCTACGGAGTATGCTCAAAGAAATACCCCATCTATAT
AGTAACTGAGTATATAACAAATGGTTGCTTGCTTAATTACCTGAAGAGTCATGGGAAAGGACTAGAAAGT
TGCCAGCTCTTAGAAATGTGTTATGATGTCTGTGAAGGCATGGCCTTCTTGGAGAGCCATCAGTTCATAC
ATCGAGATTTGGCTGCTCGGAACTGTTTGGTGGACAGTGATCTCTCTGTGAAAGTCTCAGACTTTGGAAT
GACGAGATATGTCCTTGATGATCAGTATGTCAGCTCAGTAGGAACCAAGTTTCCAGTCAAGTGGTCAGCT
CCAGAGGTGTTTCACTACTTCAAATACAGCAGCAAGTCGGATGTATGGGCATTTGGGATCCTGATGTGGG
AGGTGTTTAGTCTAGGGAAGCAGCCCTATGACTTATATGATAACTCCGAGGTGGTTGTGAAGGTCTCCCA
GGGCCACAGACTCTACCGGCCCCAACTGGCATCAGACACCATCTACCAGATCATGTACAGCTGCTGGCAT
GAGCTTCCAGAAAAGCGCCCCACATTTCAGCAACTCCTGTCTGCCATAGAACCACTTCGGGAACAAGATA
AACCATGA

Translation (655 aa):
MDDNMESKSILEELLLKKSQQKKKMSPNNYKERLFVLTKTSLSYYEYDKMKRGSRKGSIEIKKIRCVEKV
NLEEQTPVERQYPFQIVYKDGLLYVYASNEESRCQWLKALQKEIRGNPHLLIKYHSGFFVDGKFLCCQQS
CKAAPGCTLWEAYADLHIAISDEKHRAPTFPERLLKIPRAVPVLKMDASSSGAILPQYDSYSKKSCGSQP
TSNIRYIPREDCPDWWQVRKLKSEEDIACSNQLERNIASHSTSKMSWGFPESSSSEEEENLHAYDWFAGN
ISRSQSEQLLRQKGKEGAFMVRNSSQMGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSI
PKLIHYHQHNSAGMITRLRHPVSTKANKVPVSVALGSGIWELKREEITLLKELGNGQFGVVQLGQWKGQY
DVAVKMIKEGAMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKKYPIYIVTEYITNGCLLNYLKSHGKGLES
CQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDSDLSVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSA
PEVFHYFKYSSKSDVWAFGILMWEVFSLGKQPYDLYDNSEVVVKVSQGHRLYRPQLASDTIYQIMYSCWH
ELPEKRPTFQQLLSAIEPLREQDKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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