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Report for CCDS29436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29436.1 Public Mus musculus 19 Rbm4 23 108 98 CCDS HistoryNCBI Gene:19653Re-query CCDS DB by CCDS ID:29436.1Re-query CCDS DB by GeneID:19653See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179189.8 ENSMUSP00000137174.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179189.8Link to Ensembl Protein Viewer:ENSMUSP00000137174.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000179189Re-query CCDS DB by Protein ID:ENSMUSP00000137174
Original member Current member EBI ENSMUST00000180248.7 ENSMUSP00000137345.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180248.7Link to Ensembl Protein Viewer:ENSMUSP00000137345.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180248Re-query CCDS DB by Protein ID:ENSMUSP00000137345
Original member Current member NCBI NM_001290122.1 NP_001277051.1 Accepted alive Link to Nucleotide Sequence:NM_001290122.1Link to Protein Sequence:NP_001277051.1Re-query CCDS DB by Nucleotide ID:NM_001290122Re-query CCDS DB by Protein ID:NP_001277051Link to BLAST:NP_001277051.1
Original member Current member NCBI NM_001290123.1 NP_001277052.1 Accepted alive Link to Nucleotide Sequence:NM_001290123.1Link to Protein Sequence:NP_001277052.1Re-query CCDS DB by Nucleotide ID:NM_001290123Re-query CCDS DB by Protein ID:NP_001277052Link to BLAST:NP_001277052.1
Original member Current member NCBI NM_009032.3 NP_033058.2 Accepted alive Link to Nucleotide Sequence:NM_009032.3Link to Protein Sequence:NP_033058.2Re-query CCDS DB by Nucleotide ID:NM_009032Re-query CCDS DB by Protein ID:NP_033058Link to BLAST:NP_033058.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277051.1 361 Q8C7Q4-1 361 100% 0 0
NP_001277052.1 361 Q8C7Q4-1 361 100% 0 0
NP_033058.2 361 Q8C7Q4-1 361 100% 0 0

Chromosomal Locations for CCDS 29436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4787369 4788042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4792398 4792809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGTGAAGCTGTTCATTGGAAATCTGCCCCGGGAGGCCACAGAGCAGGAGATCCGCTCACTCTTCGAGC
AGTACGGGAAGGTGCTGGAATGTGACATCATTAAGAATTATGGCTTTGTGCACATAGAGGACAAGACGGC
CGCTGAGGATGCCATACGCAACCTGCACCACTACAAGCTGCACGGAGTGAACATCAATGTGGAAGCCAGC
AAGAATAAGAGCAAAGCTTCAACCAAGTTACACGTGGGCAACATCAGCCCCACTTGTACCAACCAAGAGC
TTCGGGCCAAGTTTGAGGAGTACGGCCCAGTCATCGAATGTGACATCGTGAAAGATTATGCCTTTGTACA
CATGGAGCGGGCAGAGGATGCGGTGGAGGCCATCAGGGGCCTCGACAACACAGAGTTTCAAGGCAAACGA
ATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACCGCGCCCGGGATGGGAGACCAGAGCGGCTGCTATC
GGTGCGGGAAAGAGGGGCACTGGTCCAAAGAGTGTCCAATAGATCGTTCGGGCCGCGTGGCAGACTTGAC
CGAGCAATATAATGAGCAATATGGAGCAGTGCGTACGCCTTACACCATGAGTTATGGGGATTCATTGTAT
TACAACAACACGTACGGAGCGCTCGATGCCTACTACAAGCGCTGCCGTGCTGCCCGGTCCTATGAGGCAG
TGGCAGCTGCAGCTGCCTCTGCGTATAGTAACTATGCAGAGCAGACTTTGTCTCAGCTGCCACAAGTCCA
GAACACAGCCATGGCCAGTCACCTCACCTCCACCTCTCTCGATCCCTACAATAGACATCTGTTGCCGCCT
TCAGGAGCTGCAGCAGCAGCAGCAGCTGCTGCTGCTTGTACTGCAGCTTCTACTTCATATTACGGGCGGG
ATCGGAGCCCCCTGCGTCGCGCTACAGGCCCAGTCCTCACTGTTGGAGAGGGCTACGGTTACGGGCATGA
CAGTGAGTTGTCCCAAGCTTCAGCAGCTGCTCGGAATTCCCTGTACGACATGGCCCGGTATGAGCGGGAG
CAGTATGCGGATCGGGCGCGGTACTCAGCCTTTTAA

Translation (361 aa):
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS
KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR
MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY
YNNTYGALDAYYKRCRAARSYEAVAAAAASAYSNYAEQTLSQLPQVQNTAMASHLTSTSLDPYNRHLLPP
SGAAAAAAAAAACTAASTSYYGRDRSPLRRATGPVLTVGEGYGYGHDSELSQASAAARNSLYDMARYERE
QYADRARYSAF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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