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Report for CCDS29049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29049.1 Public Mus musculus 18 Gjd4 23 108 98 CCDS HistoryNCBI Gene:225152Re-query CCDS DB by CCDS ID:29049.1Re-query CCDS DB by GeneID:225152See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041007.3 ENSMUSP00000035472.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041007.3Link to Ensembl Protein Viewer:ENSMUSP00000035472.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000041007Re-query CCDS DB by Protein ID:ENSMUSP00000035472
Original member NCBI NM_153086.5 NP_694726.2 Updated not alive Link to Nucleotide Sequence:NM_153086.5Link to Protein Sequence:NP_694726.2Re-query CCDS DB by Nucleotide ID:NM_153086Re-query CCDS DB by Protein ID:NP_694726
Current member NCBI NM_153086.6 NP_694726.2 Accepted alive Link to Nucleotide Sequence:NM_153086.6Link to Protein Sequence:NP_694726.2Re-query CCDS DB by Nucleotide ID:NM_153086Re-query CCDS DB by Protein ID:NP_694726Link to BLAST:NP_694726.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694726.2 364 Q8BSD4 364 100% 0 0

Chromosomal Locations for CCDS 29049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 9279982 9281012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9282555 9282618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGAGAAGTTGAACTTGTTGGGATTCCTCATCATCACCTTAAACTGTAACGTGACCATCATGGGCATGA
TCTGGCTGATCGTGGAGGTCTTGCTGAGGATGCTAGTGGTGGTCTTGGCAGGGTCACCTATCTATGAGGA
TGAACAAGAGAGGTTTATTTGCAACACACTGCAACCAGGATGTGCCAACGTTTGCTACGACCTCTTTTCC
CCAGTGTCACCGCTGCGATTCTGGCTAGTGCAGAGCCTGGCCTTGCTTCTGCCTTCGGTGGTCTTTGGCA
CTTACACCCTACACCGCGGTGCGAAGCTGGCTGCAGTGGGGGGAGCCTGCAGGCCCCAGGTGCCCGACCT
GTCTACTGCCTACCTGGTGCACCTACTGCTGCGCATGCTGCTGGAGGCCGGGCTGGCCTTCCTGCACTAC
TTTCTCTTTGGCTTTTCTGTGCCCGCCCGCGTGTCTTGCTCGCATGTACCCTGCTCAGGGGCTGTGGACT
GCTACGTGTCGCGGCCCACGGAGAAGTCACTCCTGATACTATTCTTTTGGGCAGTGAGTGCGCTATCCTT
CCTGCTCAGCTTGGCTGACCTGCTTTGGATCCTGCCGAGGAGAAAGACACTGAGGACCACGCAGTGGGTG
AATGGAGAGGCTAGACCAGTCTGTGAAGTACCTGCACCTCCCCCTTGCCTCTTACAAAACCCCCAGGGCT
ATCTTAGCCAAGGTCAGGTGGACCAAGAGGACAGACAGGAGGAACAAGTTGTGCCTGAGTTCCCCTGCAT
GTGGACAGCAGGGCAGAGTGACAACAGCAATGTTGGTCAGGCCTGTGTGTCGGGGCTGCTGGAACATTCA
GACCAAGATGCTAGTGAGGCCACTTCCTCAGCTGGTGACAGGCTAACAGTGGCTCACACAGCACATGAGC
TCAGATTCCACAGAGAGACTTCACTGGACCTGGGGGGCAAAAACACCCAGGCAGATGAACTCTCCTTGGC
TACCCAGAGCCACCTGGCCAGACACAGTTCAGCCAGCAAGCCTCAAGCTCCATGCCGGCTGACCACCTCA
GGCAGTGCTCCCCATTTGAGAACCAAAAAATCTGAGTGGGTGTGA

Translation (364 aa):
MEKLNLLGFLIITLNCNVTIMGMIWLIVEVLLRMLVVVLAGSPIYEDEQERFICNTLQPGCANVCYDLFS
PVSPLRFWLVQSLALLLPSVVFGTYTLHRGAKLAAVGGACRPQVPDLSTAYLVHLLLRMLLEAGLAFLHY
FLFGFSVPARVSCSHVPCSGAVDCYVSRPTEKSLLILFFWAVSALSFLLSLADLLWILPRRKTLRTTQWV
NGEARPVCEVPAPPPCLLQNPQGYLSQGQVDQEDRQEEQVVPEFPCMWTAGQSDNSNVGQACVSGLLEHS
DQDASEATSSAGDRLTVAHTAHELRFHRETSLDLGGKNTQADELSLATQSHLARHSSASKPQAPCRLTTS
GSAPHLRTKKSEWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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