CCDS Report for Consensus CDS

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Report for CCDS29019.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
29019.1	Public	Mus musculus	17	Msh2	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29019.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000024967.13	ENSMUSP00000024967.7	Accepted	alive
		NCBI	NM_008628.3	NP_032654.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_032654.1	935	P43247	935	100%	0	0

Chromosomal Locations for CCDS 29019.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)

Genome Browser links:

Chromosome	Start	Stop
17	87672596	87672806
17	87678208	87678362
17	87679800	87680078
17	87682531	87682677
17	87685437	87685586
17	87686296	87686429
17	87688942	87689141
17	87696495	87696604
17	87707182	87707305
17	87708452	87708602
17	87712629	87712726
17	87717455	87717700
17	87718601	87718805
17	87719288	87719535
17	87720883	87721058
17	87723331	87723504

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2808 nt):
ATGGCGGTGCAGCCTAAGGAGACGCTGCAGTTGGAAGGCGCGGCCGAGGCGGGCTTCGTGCGCTTCTTTG AGGGCATGCCGGAGAAGCCGAGCACCACGGTGCGCCTCTTCGACCGCGGCGACTTTTACACGGCGCACGG AGAGGACGCGCTGCTGGCGGCCCGCGAGGTGTTCAAGACCCAGGGCGTGATCAAGTACATGGGGCCGGCA GGGAGTAAGACCCTGCAGAGTGTTGTGCTTAGCAAGATGAACTTTGAGTCTTTCGTGAAAGATCTTCTTC TGGTTCGCCAGTATCGAGTTGAAGTTTATAAGAATAAAGCTGGAAATAAGGCGTCTAAGGAGAATGAGTG GTATCTGGCATTTAAGGCTTCTCCCGGCAATCTTTCTCAGTTTGAAGACATCCTGTTTGGTAACAATGAC ATGTCAGCTTCCGTTGGCGTTATGGGTATTAAAATGGCCGTGGTTGATGGTCAAAGACATGTTGGAGTTG GGTATGTGGATTCCACCCAGAGGAAGCTAGGCTTGTGTGAGTTCCCCGAGAATGATCAGTTCTCCAATCT CGAGGCTCTTCTGATTCAGATTGGACCAAAGGAATGCGTTTTACCAGGAGGAGAGACTACTGGAGACATG GGGAAACTGAGGCAGGTTATCCAGAGAGGAGGGATTCTGATCACAGAAAGAAAGAGAGCCGACTTTTCCA CTAAAGACATTTATCAGGATCTCAACCGGTTACTGAAAGGCAAAAAAGGAGAACAGATAAATAGTGCTGC CCTACCAGAGATGGAGAATCAGGTTGCAGTTTCATCACTATCTGCAGTAATCAAGTTTTTAGAACTCTTA TCAGACGATTCAAATTTTGGGCAGTTTGAACTGGCCACTTTTGACTTCAGCCAGTACATGAAGTTGGACA TGGCAGCAGTTAGAGCCCTCAACCTTTTCCAGGGTTCTGTTGAAGACACCACTGGCTCTCAGTCTCTGGC CGCATTATTGAATAAATGCAAAACTGCTCAAGGACAAAGATTGGTTAACCAGTGGATCAAGCAGCCGCTC ATGGATAGGAACAGGATAGAGGAGAGGTTAAATTTAGTGGAAGCTTTTGTCGAGGATTCAGAACTGAGGC AGAGTTTACAGGAGGATTTGCTTCGCCGGTTTCCAGACCTTAACCGGCTTGCCAAGAAATTCCAGAGACA AGCAGCGAATTTACAAGACTGTTACCGACTGTATCAGGGTATTAACCAGCTCCCCAGCGTCATCCAGGCT CTGGAGAAATACGAAGGAAGACACCAGGCACTGTTGTTGGCAGTTTTTGTGACTCCTCTTATTGATCTTC GTTCTGATTTTTCAAAATTTCAAGAAATGATAGAAACAACTTTAGATATGGATCAGGTGGAAAACCACGA GTTCCTTGTAAAACCTTCATTTGATCCTAACCTGAGTGAACTAAGAGAAGTCATGGATGGCCTGGAGAAG AAGATGCAGTCCACCTTAATAAATGCAGCCCGGGGGCTCGGATTGGATCCTGGCAAACAGATTAAATTGG ACTCCAGTGCACAGTTTGGATATTATTTCCGTGTAACCTGCAAGGAAGAGAAAGTGCTTCGCAACAACAA GAACTTCAGCACAGTGGACATCCAGAAGAATGGCGTGAAGTTTACCAACAGTGAATTGTCCTCTTTAAAT GAAGAATATACTAAGAACAAAGGCGAGTATGAAGAGGCCCAGGATGCCATTGTTAAAGAAATTGTCAATA TTTCCTCAGGCTACGTAGAGCCAATGCAGACGCTCAACGATGTGCTGGCTCACTTAGACGCCATTGTTAG CTTCGCTCATGTGTCAAACGCAGCACCCGTTCCTTATGTACGACCAGTCATCTTGGAGAAAGGAAAAGGG AGAATTATATTGAAAGCCTCCAGGCATGCTTGTGTTGAAGTTCAAGATGAAGTTGCATTTATTCCAAATG ACGTGCACTTTGAAAAAGATAAACAGATGTTCCACATCATTACTGGTCCCAATATGGGAGGTAAATCAAC ATACATTCGTCAGACCGGGGTGATTGTACTCATGGCCCAAATCGGGTGTTTTGTGCCCTGTGAGTCGGCA GAAGTGTCCATTGTGGATTGCATCCTTGCTCGAGTCGGGGCTGGTGACAGTCAACTGAAAGGCGTCTCCA CATTCATGGCTGAAATGCTGGAGACTGCTTCCATCCTCAGGTCAGCAACCAAAGACTCCTTAATAATCAT TGATGAGCTGGGAAGAGGAACCTCTACCTATGATGGATTTGGGTTAGCATGGGCTATATCAGATTACATT GCAACGAAGATTGGTGCCTTTTGCATGTTTGCCACCCATTTTCATGAACTTACTGCTTTGGCCAACCAAA TACCAACTGTTAATAATCTACATGTCACAGCGCTCACTACTGAGGAGACCCTAACTATGCTTTACCAAGT GAAAAAAGGTGTCTGTGATCAGAGTTTCGGGATTCACGTGGCTGAGCTCGCTAACTTCCCGAGGCACGTG ATAGCGTGCGCCAAGCAGAAGGCTCTAGAGCTTGAAGAATTTCAGAACATTGGAACCTCGCTGGGATGTG ACGAAGCCGAGCCGGCTGCAAAGAGACGCTGCCTGGAAAGAGAGCAAGGTGAGAAAATTATTCTGGAGTT CCTGTCGAAGGTCAAGCAGGTGCCCTTTACTGCCATGTCGGAGGAGAGCATCTCCGCGAAGCTGAAGCAA CTGAAAGCCGAGGTGGTCGCAAAGAACAACAGCTTCGTAAACGAGATCATTTCACGGATAAAGGCTCCGG CTCCGTGA
Translation (935 aa):
MAVQPKETLQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPA GSKTLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNKAGNKASKENEWYLAFKASPGNLSQFEDILFGNND MSASVGVMGIKMAVVDGQRHVGVGYVDSTQRKLGLCEFPENDQFSNLEALLIQIGPKECVLPGGETTGDM GKLRQVIQRGGILITERKRADFSTKDIYQDLNRLLKGKKGEQINSAALPEMENQVAVSSLSAVIKFLELL SDDSNFGQFELATFDFSQYMKLDMAAVRALNLFQGSVEDTTGSQSLAALLNKCKTAQGQRLVNQWIKQPL MDRNRIEERLNLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPSVIQA LEKYEGRHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREVMDGLEK KMQSTLINAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSELSSLN EEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAHLDAIVSFAHVSNAAPVPYVRPVILEKGKG RIILKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA EVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYI ATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV IACAKQKALELEEFQNIGTSLGCDEAEPAAKRRCLEREQGEKIILEFLSKVKQVPFTAMSEESISAKLKQ LKAEVVAKNNSFVNEIISRIKAPAP

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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