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Report for CCDS28127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28127.1 Public Mus musculus 16 Lmln 23 108 98 CCDS HistoryNCBI Gene:239833Re-query CCDS DB by CCDS ID:28127.1Re-query CCDS DB by GeneID:239833See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023497.2 ENSMUSP00000023497.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023497.2Link to Ensembl Protein Viewer:ENSMUSP00000023497.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000023497Re-query CCDS DB by Protein ID:ENSMUSP00000023497
Original member Current member NCBI NM_172823.2 NP_766411.1 Accepted alive Link to Nucleotide Sequence:NM_172823.2Link to Protein Sequence:NP_766411.1Re-query CCDS DB by Nucleotide ID:NM_172823Re-query CCDS DB by Protein ID:NP_766411Link to BLAST:NP_766411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766411.1 681 Q8BMN4 681 100% 0 0

Chromosomal Locations for CCDS 28127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 33062549 33062734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33066311 33066408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33067286 33067316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33069041 33069123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33069881 33069998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33074005 33074183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33080931 33081036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33083019 33083113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33088102 33088219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33089265 33089372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33091286 33091362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33096901 33097011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33104709 33104841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33107014 33107173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33109778 33109908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33117001 33117211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33123522 33123622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGGCGGCCGCTGGGTCTGGAGGAGCGGGCGGCCCGGGACCAGGGCCGCGAGGCCGCTGGGGCGGCTGCC
TGTGGGTGCGAGGCGTCCTGCTTGTGCTGGGCGGGCTCCCGGCCGGTGCCGGAGCTGCTCCCGTCTCCCT
GGGCACTTCGCCTCCGTGTCGCCATCACGTCCTTTCGGACACTGAGGTCATAAATAAGGTCCATCTTAAG
ACAAATCATGTCACGAAGAGAGATGCTGACGGGCATTTACGAATCAAGACCATCTACGACCAGAGCATTG
AAGAGTTGCTCCCTGAGAAAAGATATCTTGTAAAGAACAAACTTTTCCCTCAAGCTATTTCTTATTTAGA
GAAAACATTTCAGGTTCGAAGACCTGCTGGCAGGATCTTACTTAGCAGACAATGTGCGACAAACCAGTAC
CTACGGAAGGAAAACGATCCACACAGATACTGTACTGGAGAGTGTGCGGTGCATACCAAGTGCGGGCCTG
TTATAGTGCCGGAGGAGCACCTCCAGCAATGCAGGGTCTGCCGAGAGGGTAAGTGGCCGTGTGGAGCAGT
GGGTGTGCTTGACCCAGAGGGTGTGCGGGACGCAGACTTCGTTCTTTATGTGGGTGCTCTGGCCACTGAG
AGGTGCAGCCACGAAAACATCATCTCCTACGCAGCCTATTGTCAGCAGGAGGCAAAAATGGACAGGCCCA
TAGCAGGATATGCTAACCTGTGTCCAAATATGATCTCCACCCAGCCCCAGGAGTTCATCGGGATGCTGTC
CACAGTGAAGCATGAGATCATTCATGCCCTGGGCTTCTCTGCTGGTCTTTTTGCATTCTACCATGATCAA
GATGGAAACCCCCTGACTTCAAGGTCTGCAGATGGCCTCCCGCCCTTCAACTATAGTCTTGGCTTGTATC
AGTGGAGTGATAAAGTGGTTCGGAAAGTGGAGAGATTGTGGAATGTTCGAGATAACAAGATAGTTCGCCA
CACTGTGTATCTCCTAGTAACACCGCGTGTTGTTGAAGAAGCTCGGAAGCATTTTAACTGTCCGGTCCTC
GAGGGCATGGAGCTTGAAAACCAAGGCGGGATGGGCACGGAGCTGAACCACTGGGAGAAGCGCTTGCTCG
AGAATGAAGCAATGACTGGTTCCCACACCCAGAACAGAGTCCTGTCTCGGATCACTCTGGCGTTAATGGA
GGACACTGGCTGGTACAAAGCCAATTACAGCATGGCTGAGAAACTCGACTGGGGCCGAGGACTGGGCTGT
GAATTTGTCAGGAAGAGCTGTAAATTCTGGATTGATCAGCACAGGCAAAGGAGGCAGGTGCCGAGCCCGT
ACTGTGACACACTCAGAAGTAACCCGCTGCAGCTGACCTGCAGACAGGACCAGAGAGCCGTCGCTGTGTG
TAACCTGCAGAGGTTTCCTAACCCCTTACCACCCGAGTACCAGTACTTTGATGAGCTCACTGGGATACCT
GCGGAGGATCTGCCTTACTATGGCGGGTCTGTGGAAATCGCTGACTATTGTCCTTTCAGTCAGGAATTCA
GCTGGCATTTAAGTGGCGAATACCAGCGCAGCTCCGACTGTAGAATCCTGGAAAACCAACCAGAGCTGTT
TAAGAACTACGGGGCAGAGCAGTACGGGCCGCACTCGGTCTGTCTGCTTCAGAAGTCTGCGTTCATCATG
GAGCAGTGCGAGAGGAAGCTCAGCTACCCAGACTGGGGGAGCGGCTGCTACCAGGTTTCTTGTTCTCCTC
AAGGTCTAAAGGTTTGGGTTCAAGACACTTCCTATCTGTGTAGCCGGGCCGGGCAGGTGCTCCCAGTCCG
AATTCAGATGAACGGCTGGATTCACAATGGAAACCTGCTGTGCCCTTCCTGCTGGGACTTCTGTGAGCAG
TGTCCACCAGAAACAGACCCTCCAGCTGCCAACCTGACTCGAGCCCTTCCTCTGGATCTCTGTTCCTGCT
CTTCTAGCCTGGTGGTCACACTTTGGCTCCTCCTCGGCAATCTGTTTCCTCTGCTGGCGGGGTTCCTTCT
GTGTGTGTGGCACTAG

Translation (681 aa):
MAAAGSGGAGGPGPGPRGRWGGCLWVRGVLLVLGGLPAGAGAAPVSLGTSPPCRHHVLSDTEVINKVHLK
TNHVTKRDADGHLRIKTIYDQSIEELLPEKRYLVKNKLFPQAISYLEKTFQVRRPAGRILLSRQCATNQY
LRKENDPHRYCTGECAVHTKCGPVIVPEEHLQQCRVCREGKWPCGAVGVLDPEGVRDADFVLYVGALATE
RCSHENIISYAAYCQQEAKMDRPIAGYANLCPNMISTQPQEFIGMLSTVKHEIIHALGFSAGLFAFYHDQ
DGNPLTSRSADGLPPFNYSLGLYQWSDKVVRKVERLWNVRDNKIVRHTVYLLVTPRVVEEARKHFNCPVL
EGMELENQGGMGTELNHWEKRLLENEAMTGSHTQNRVLSRITLALMEDTGWYKANYSMAEKLDWGRGLGC
EFVRKSCKFWIDQHRQRRQVPSPYCDTLRSNPLQLTCRQDQRAVAVCNLQRFPNPLPPEYQYFDELTGIP
AEDLPYYGGSVEIADYCPFSQEFSWHLSGEYQRSSDCRILENQPELFKNYGAEQYGPHSVCLLQKSAFIM
EQCERKLSYPDWGSGCYQVSCSPQGLKVWVQDTSYLCSRAGQVLPVRIQMNGWIHNGNLLCPSCWDFCEQ
CPPETDPPAANLTRALPLDLCSCSSSLVVTLWLLLGNLFPLLAGFLLCVWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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