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Report for CCDS27693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27693.1 Public Mus musculus 15 Tcf20 23 108 98 CCDS HistoryNCBI Gene:21411Re-query CCDS DB by CCDS ID:27693.1Re-query CCDS DB by GeneID:21411See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048966.6 ENSMUSP00000048486.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048966.6Link to Ensembl Protein Viewer:ENSMUSP00000048486.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048966Re-query CCDS DB by Protein ID:ENSMUSP00000048486
Original member Current member NCBI NM_013836.3 NP_038864.3 Accepted alive Link to Nucleotide Sequence:NM_013836.3Link to Protein Sequence:NP_038864.3Re-query CCDS DB by Nucleotide ID:NM_013836Re-query CCDS DB by Protein ID:NP_038864Link to BLAST:NP_038864.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038864.3 1965 Q9EPQ8-2 1965 100% 0 0

Chromosomal Locations for CCDS 27693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82809770 82809787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82815611 82815660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82825231 82825324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82851513 82857248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5898 nt):
ATGCAGTCGTTTCGGGAGCAAAGCAGTTACCACGGAAACCAGCAGAGCTACCCACAGGAGGTGCACAGCT
CATCCCGCATAGAAGAGTTCAGCCCTCGCCAGGCCCAGATGTTCCAGAATTTTGGGGGAGCAGGTGGTGG
TAGTAGTGGCACTGGCAGCAGCAGTAGCGGTCGACGAGGAACAGCTGCTGCAGCGGCAGCAATGGCTAGT
GAGACCTCTGGCCATCAAGGCTATCAGGGTTTCAGGAAAGAAGCTGGAGATTTTTACTACATGGCAGGCA
ACAAAGACACAGTGGCAGCAGGAACCCCACAGCCTCCTCAGCGAAGGCCTTCTGGGCCTGTACAGAGCTA
TGGACCTCCCCAGGGGAGCAGCTTTGGCAATCAGTATGCGAGTGAGGGTCATGTGAGCCAATTTCAAGCA
CAGCACTCTGCCCTTGGTGGTGTGTCTCATTATCAGCAGGATTACACAGGGCCTTTCTCTCCTGGGAGTG
CTCAGTATCAACAGCAGGCCTCTAGCCAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA
GCAACAGCAGCAGCAAGTACAGCAGTTGAGACAACAGCTTTACCAATCCCATCAGCCTCTGCCACAAACC
ACTGGACAGCCAGCCTCTGGCTCATCGCATCTACAACCAATGCAGCGGCCCTCAACTCTGCCATCTTCTG
CTGGTTATCAGTTAAGAGTAGGTCAGTTTGGACAGCACTACCAGTCTTCTGCTTCCTCCTCTTCCTCCTC
CTCCTTCCCTTCTCCACAGCGTTTCAGTCAGTCTGGACAAAGCTATGATGGCAGTTACAGTGTGAATGCT
GGATCTCAGTATGAAGGGCATAATGTGGGTTCTAATGCACAGGCTTATGGAACACAATCAAATTATAGCT
ATCAACCTCAGTCTATGAAAAATTTTGAACAGGCAAAGATTCCACCAGGAAACCAGCAGGGGCAGCAGCA
GCAACAGCAGCAACCACAACCTCAGCAACAGCAGCCGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAA
CATCCTCCCCAGCATGTGATGCAGTACACAAATGCTGCCACCAAGATGCCTCTGCAAAGCCAGGTTGGGC
AGTACAACCAGCCTGAGGTTCCTGTAAGGTCTCCCATGCAGTTCCACCAGAATTTCAGCCCTATTTCTAA
CCCTTCTCCAGCTGCTTCTGTGGTTCAGTCTCCAAGCTGTAGCTCTACACCTTCTCCTCTCATGCAGAGT
GGTGAGAATCTCCAGTGTGGGCAAGGCAATGTGCCCATGAGTTCCAGAAACCGAATTTTACAGCTAATGC
CCCAGCTCAGTCCAACTCCATCAATGATGCCCAGTCCTAACTCTCATGCTGCAGGATTCAAAGGATTTGG
ATTAGAAGGGGTGCCGGAAAAGCGGCTGACTGATCCTGGGTTGAGTAGTTTGAGTGCTTTGAGTAGTCAA
GTGGCCAATCTTCCTAATACTGTCCAGCACATGTTACTTTCTGATGCTTTGACACCTCAGAAGAAGACGT
CTAAGAGGCCCTCATCATCATCTAAGAAAGCAGATAGCTGTACAAACTCAGAAGGCTCCTCACAGCCTGA
AGAACAACTAAAGTCCCCTATGGCTGAGTCATTGGATGGAGGTTGCTCTAGTAGTTCAGAAGATCAAGGT
GAGAGGGTGAGGCAACTGAGTGGCCAGAGCACTAGCTCTGACACCACCTATAAGTGTGGCGCTTCAGAGA
AAGCTGGCTCCTCACCAACACAAGGTGCTCAGAATGAGGCCCCTAGGCTCAGTACCAGTCCTGCAACTAG
GGACGAAGCTGCCTCTCCAGGTGCTAAGGACACATCACTGTCATCTGAGGGGAACACAAAAGTCAATGAG
AAGACAGTTGGGGTGATTGTCTCCCGAGAAGCCATGACAGGTCGGGTAGAAAAATCTGGTGGACAAGATA
AAGGCTCCCAGGAGGATGATCCTGCTGCCAGTCAGAGACCACCTAGCAATAGTGGCGTAAAGGAAATCAG
CCACACATCACTTCCACAGCCAGATCCTCCAGGAGGAGGGAGCAAAGGAAACAAGAATGGTGATAATAAT
AGCTCTAACCACAATGGAGAGGGGAATGGCCCGAGTAGCCACTCCGCAGTAGGCCCAAGTTTCACAGGCA
GGACTGAGCCTAGCAAGTCTCCTGGAAGTTTGCGCTATAGTTACAAAGAGAGTTTTGGGTCAGCTGTACC
ACGAAATGTCAGTGGTTATCCTCAGTATCCTTCAGGACAAGAAAAGGGGGATTTTGGCAGCCATGGAGAG
CGAAAGGGTAGAAATGAGAAGTTCCCAAGTCTTCTACAGGAAGTGCTTCAGGGCTACCACCACCATCCTG
ACAGAAGGTATCCTAGAAGCGCACAGGAACATCAAGGGATGGCTAGTGGCCTGGAAGGAACTGCAAGGCC
TAACATCTTAGTCAGTCAAACCAATGAATTAGCTAGCAGGGGCCTTCTGAACAAGAGTATTGGATCCCTG
TTGGAAAATCCCCACTGGGGACCATGGGAAAGGAAGTCAAGCAGCACAGCTCCTGAAATGAAACAGATCA
ATTTGTCTGACTATCCCATTCCCAGGAAGTTTGAGATAGAACCTCCATCATCAGCCCATGAGCCTGGAGG
CTCCCTTTCTGAAAGGAGGTCAGTAATCTGTGATATATCCCCACTAAGACAGATTGTCAGGGACCCAGGG
GCTCACTCATTGGGACACATGGGTACTGATGCCAGAATTGGGAGGAATGAACGTCTCAACCCAAGTTTAA
GTCAGTCAGTCATTCTTCCTGGTGGGTTGGTGTCCATGGAAACAAAATTGAAATCCCAGAGTGGACAGAT
AAAAGAGGAAGACTTTGAACAATCCAAATCTCAAGCTAGTTTCAACAAGAAATCTGGAGACCACTGCCAT
CCTACCAGCATCAAACATGAGACTTACCGTGGCAATGCAAGTCCTGGAGCAGCAGCCCATGATTCCATTT
CAGACTATGGCCCACAAGATAGCAGGTCCACACCAATGCGGCGGGTCCCTGGTAGAGTTGGTAGCCGGGA
GACTATGAGGGGTCGGTCCTCTTCTCAGTACCATGACTTTGCAGAAAAATTGAAGATGTCTCCAGGCAGG
AGCAGAGGCCCAGGGGGAGACCCTCATCACATGAACCCACATATGACCTTTTCAGAGAGGGCCAATAGGA
GTTCTTTACATGCTCCTTTTTCTCCCAACTCAGAAAGCCTGGCCTCTGCTTACCACACAAACACCAGGGC
TCATGCTTATGGGGACCCTAATACCGGTTTGAATTCCCAGCTCCATTATAAGAGACAGATGTACCAACAG
CAACAAGAGGAGTATAAAGACTGGGCCAGCAGTTCTGCTCAGGGAGTGATCGCTGCTGCGCAGCATAGGC
AGGAAGGCCCACGCAAGAGCCCAAGGCAGCAGCAGTTTCTTGACAGAGTACGGAGCCCCCTGAAAAATGA
CAAAGACGGAATGATGTATGGCCCACCAGTAGGTACGTATCATGACCCAAGCACTCAGGAAGCTGGGCGC
TGTCTCATGTCTAGTGATGGTCTGCCTGCCAAAAGCATGGAATTGAAGCACAGCTCTCAGAAGTTACAAG
AGTCTTGTTGGGATCTTTCTCGGCAGACTTCTCCAGCCAAAAGCAGTGGTCCTCCAGGAATGTCTAATCA
AAAACGGTATGGGCCACCCCATGAGCCAGATGGACATGGACTAGCCGAGTCTGCACAGTCATCCAAACCT
AGTAACGTCATGTTACGGCTTCCTGGTCAAGAGGATCATTCTTCTCAAAATCCTTTAATCATGCGAAGGC
GGGTTCGTTCTTTTATCTCCCCTATTCCCAGTAAGAGACAGTCACAAGATGTAAAAAACAGTAACGCTGA
TGATAAAGGGCGCCTCCTCCACCCATCAAAAGAAGGTGCCGATAAAGCATACAATTCCTACAGCCATCTT
TCTCACAGTCAGGATATCAAGTCTATTCCTAAGAGAGATTCCTCCAAGGACCTTCCAAACCCAGACAATA
GAAACTGTCCTGCTGTTACCCTGACAAGTCCTGCTAAGACCAAAATACTGCCCCCACGGAAGGGACGGGG
ATTAAAATTGGAAGCTATAGTTCAGAAGATCACATCTCCAAATATTAGGAGGAGTGCATCTGCAAACAGT
GCTGAGGCTGGGGGAGACACAGTCACACTGGATGATATACTATCTCTAAAGAGTGGTCCTCCTGAAGGTG
GCACTGTGGCTACTCAAGAGGCTGAGATGGAAAAGCGAAAGTGTGAGGTGGTATCTGACCTAGTCAGTGT
AACTAACCAGGAATCGAATGTTGAGAAGCCTCTTCCAGGGCCTTCTGAAGAGTGGCGTGGCAGTGGGGAT
GACAAAGTCAAGACAGAGGCACATGTAGAAACAGCTTCTACTGGAAAGGAACCCTCTGGTACTATGACAT
CCACAGCTTCACAGAAGCCTGGTGGTAACCAAGGGAGACCAGATGGTTCCCTGGGTGGGGCAGCACCACT
AATCTTTCCTGACTCAAAGAATGTAGCTCCAGTGGGCATATTGGCCCCTGAGGCAAATCCCAAGGCTGAA
GAGAAAGAGAACGATACAGTCATGATTTCACCCAAACAAGAAAGTTTCCCCCCTAAAGGGTATTTCCCAT
CAGGAAAGAAAAAGGGGAGACCAATCGGTAGTGTCAATAAGCAAAAGAAACAGCAGCAGCAACCACCTCC
ACCTCCTCAGCCCCCTCAGATGCCAGAAGGTTCTGCAGATGGGGAGCCAAAGCCAAAAAAGCAGAGGCAA
AGGAGGGAGAGAAGGAAGCCTGGGGCCCAGCCAAGGAAGCGGAAAACCAAACAAGCAGTTCCCATTGTAG
AACCTCAAGAACCAGAGATCAAGCTAAAGTACGCTACCCAGCCACTAGATAAAACTGATGCCAAGAACAA
GTCTTTTTTCCCTTACATCCATGTAGTAAATAAGTGTGAACTTGGAGCTGTTTGTACAATCATCAATGCT
GAAGAAGAAGAACAGACCAAATTGGTGAGGAGCCGGAAGGGTCAGAGATCTCTGACCCCTCCCCCCAGCA
GCACAGAAAGCAAGGTGCTCCCAGCTTCATCCTTTATGCTGCAGGGGCCTGTGGTAACAGAGTCTTCTGT
TATGGGGCACCTGGTTTGCTGTCTCTGTGGCAAGTGGGCCAGTTACCGTAACATGGGTGACCTCTTTGGA
CCCTTTTATCCCCAAGATTATGCAGCCACTCTTCCGAAGAATCCACCTCCTAAGAGGTCCTCAGAAATGC
AGAGCAAAGTCAAGGTTCGGCACAAAAGCGCTTCTAATGGTTCTAAAACTGACACTGAGGAGGAGGAGGA
GCAGCAGCAGCAGAAGGAGCAGAGGAGCCTGGCTGCTCATCCTAGGTTCAAGCGGCGCCACCGCTCAGAA
GACTGTGGTGGAGGTCCTCGGTCCCTGTCCAGGGGGCTCCCTTGTAAAAAAGCAGCCACGGAGGGCAGCA
GTGAAAAGACTGTTTCAGACACAAAGCCCTCTGTACCTACCACTTCAGAAGGTGGGCCTGAGCTGGAGTT
ACAAATCCCTGAACTACCTCTTGACAGCAACGAATTTTGGGTCCATGAGGGTTGTATTCTCTGGGCCAAT
GGAATCTACCTGGTCTGTGGCAGGCTCTATGGCCTGCAGGAAGCGCTGGAAATCGCCAGAGAGATGAAAT
GCTCCCACTGCCAGGAGGCTGGCGCTACTTTGGGCTGCTACAACAAAGGCTGCTCCTTCCGATACCATTA
CCCATGTGCCATTGACGCAGATTGTTTGCTGCATGAGGAGAATTTCTCGGTGAGGTGCCCCAAGCACAAG
GTGAGACTGTGGAGATGA

Translation (1965 aa):
MQSFREQSSYHGNQQSYPQEVHSSSRIEEFSPRQAQMFQNFGGAGGGSSGTGSSSSGRRGTAAAAAAMAS
ETSGHQGYQGFRKEAGDFYYMAGNKDTVAAGTPQPPQRRPSGPVQSYGPPQGSSFGNQYASEGHVSQFQA
QHSALGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQQQQQQQQQQQQQQQVQQLRQQLYQSHQPLPQT
TGQPASGSSHLQPMQRPSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPSPQRFSQSGQSYDGSYSVNA
GSQYEGHNVGSNAQAYGTQSNYSYQPQSMKNFEQAKIPPGNQQGQQQQQQQPQPQQQQPQQQQQQQQQQQ
HPPQHVMQYTNAATKMPLQSQVGQYNQPEVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQS
GENLQCGQGNVPMSSRNRILQLMPQLSPTPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSSQ
VANLPNTVQHMLLSDALTPQKKTSKRPSSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQG
ERVRQLSGQSTSSDTTYKCGASEKAGSSPTQGAQNEAPRLSTSPATRDEAASPGAKDTSLSSEGNTKVNE
KTVGVIVSREAMTGRVEKSGGQDKGSQEDDPAASQRPPSNSGVKEISHTSLPQPDPPGGGSKGNKNGDNN
SSNHNGEGNGPSSHSAVGPSFTGRTEPSKSPGSLRYSYKESFGSAVPRNVSGYPQYPSGQEKGDFGSHGE
RKGRNEKFPSLLQEVLQGYHHHPDRRYPRSAQEHQGMASGLEGTARPNILVSQTNELASRGLLNKSIGSL
LENPHWGPWERKSSSTAPEMKQINLSDYPIPRKFEIEPPSSAHEPGGSLSERRSVICDISPLRQIVRDPG
AHSLGHMGTDARIGRNERLNPSLSQSVILPGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNKKSGDHCH
PTSIKHETYRGNASPGAAAHDSISDYGPQDSRSTPMRRVPGRVGSRETMRGRSSSQYHDFAEKLKMSPGR
SRGPGGDPHHMNPHMTFSERANRSSLHAPFSPNSESLASAYHTNTRAHAYGDPNTGLNSQLHYKRQMYQQ
QQEEYKDWASSSAQGVIAAAQHRQEGPRKSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPSTQEAGR
CLMSSDGLPAKSMELKHSSQKLQESCWDLSRQTSPAKSSGPPGMSNQKRYGPPHEPDGHGLAESAQSSKP
SNVMLRLPGQEDHSSQNPLIMRRRVRSFISPIPSKRQSQDVKNSNADDKGRLLHPSKEGADKAYNSYSHL
SHSQDIKSIPKRDSSKDLPNPDNRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASANS
AEAGGDTVTLDDILSLKSGPPEGGTVATQEAEMEKRKCEVVSDLVSVTNQESNVEKPLPGPSEEWRGSGD
DKVKTEAHVETASTGKEPSGTMTSTASQKPGGNQGRPDGSLGGAAPLIFPDSKNVAPVGILAPEANPKAE
EKENDTVMISPKQESFPPKGYFPSGKKKGRPIGSVNKQKKQQQQPPPPPQPPQMPEGSADGEPKPKKQRQ
RRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQPLDKTDAKNKSFFPYIHVVNKCELGAVCTIINA
EEEEQTKLVRSRKGQRSLTPPPSSTESKVLPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFG
PFYPQDYAATLPKNPPPKRSSEMQSKVKVRHKSASNGSKTDTEEEEEQQQQKEQRSLAAHPRFKRRHRSE
DCGGGPRSLSRGLPCKKAATEGSSEKTVSDTKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCILWAN
GIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEENFSVRCPKHK
VRLWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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