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Report for CCDS26478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26478.1 Public Mus musculus 13 Sirt5 23 108 98 CCDS HistoryNCBI Gene:68346Re-query CCDS DB by CCDS ID:26478.1Re-query CCDS DB by GeneID:68346See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066804.4 ENSMUSP00000071048.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066804.4Link to Ensembl Protein Viewer:ENSMUSP00000071048.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066804Re-query CCDS DB by Protein ID:ENSMUSP00000071048
Original member Current member EBI ENSMUST00000223194.1 ENSMUSP00000152796.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223194.1Link to Ensembl Protein Viewer:ENSMUSP00000152796.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223194Re-query CCDS DB by Protein ID:ENSMUSP00000152796
Original member Current member NCBI NM_178848.3 NP_849179.1 Accepted alive Link to Nucleotide Sequence:NM_178848.3Link to Protein Sequence:NP_849179.1Re-query CCDS DB by Nucleotide ID:NM_178848Re-query CCDS DB by Protein ID:NP_849179Link to BLAST:NP_849179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849179.1 310 Q8K2C6 310 100% 0 0

Chromosomal Locations for CCDS 26478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 43370754 43370868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43371832 43371965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43376695 43376920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43379673 43379760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43380500 43380553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43383109 43383232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43385498 43385613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43394737 43394812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGCGACCTCTCCTGATTGCTCCGGGCCGATTCATTTCCCAGTTGTGTTGTAGACGAAAGCCTCCTGCCT
CCCCACAAAGCAAGATCTGCCTCACCATGGCTCGTCCAAGTTCAAATATGGCAGACTTTCGGAAGTGTTT
TGCGAACGCCAAGCACATAGCCATCATCTCGGGGGCTGGCGTTAGTGCGGAGAGTGGGGTTCCCACTTTC
AGAGGCGCTGGAGGTTACTGGAGAAAATGGCAGGCTCAGGACCTGGCAACCCCTCAGGCCTTTGCTCGAA
ACCCATCACAGGTGTGGGAGTTTTACCACTACCGGAGGGAGGTCATGCGGAGCAAAGAACCCAACCCCGG
GCACCTGGCCATTGCCCAGTGTGAAGCCCGGCTTCGTGACCAGGGCAGACGGGTTGTGGTCATCACCCAG
AACATTGACGAGTTGCATCGCAAGGCTGGCACCAAGAACCTTCTGGAAATCCACGGAACCTTATTTAAAA
CTCGGTGTACCTCGTGTGGCACTGTTGCCGAGAACTATAGGAGTCCGATCTGCCCAGCTTTAGCAGGAAA
AGGGGCCCCAGAGCCAGAGACTCAAGACGCCAGAATCCCAGTCGACAAACTTCCCCGGTGCGAGGAGGCA
GGATGCGGAGGCTTGCTGCGACCTCACGTGGTGTGGTTTGGAGAAAACCTGGATCCTGCCATTCTGGAGG
AGGTGGACAGAGAGCTCGCCCTCTGTGACCTGTGTCTAGTGGTGGGAACATCCTCTGTGGTCTACCCGGC
TGCCATGTTTGCCCCTCAGGTGGCTTCCAGGGGAGTCCCGGTGGCCGAGTTTAACATGGAGACCACCCCA
GCCACCGACAGATTCAGGTTTCATTTTCCCGGACCCTGTGGGAAAACTCTTCCTGAAGCCCTTGCTCCTC
ATGAAACTGAAAGGACTTCTTAA

Translation (310 aa):
MRPLLIAPGRFISQLCCRRKPPASPQSKICLTMARPSSNMADFRKCFANAKHIAIISGAGVSAESGVPTF
RGAGGYWRKWQAQDLATPQAFARNPSQVWEFYHYRREVMRSKEPNPGHLAIAQCEARLRDQGRRVVVITQ
NIDELHRKAGTKNLLEIHGTLFKTRCTSCGTVAENYRSPICPALAGKGAPEPETQDARIPVDKLPRCEEA
GCGGLLRPHVVWFGENLDPAILEEVDRELALCDLCLVVGTSSVVYPAAMFAPQVASRGVPVAEFNMETTP
ATDRFRFHFPGPCGKTLPEALAPHETERTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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