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Report for CCDS25551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25551.1 Public Mus musculus 11 Ccdc47 23 108 98 CCDS HistoryNCBI Gene:67163Re-query CCDS DB by CCDS ID:25551.1Re-query CCDS DB by GeneID:67163See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25551.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002043.9 ENSMUSP00000002043.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002043.9Link to Ensembl Protein Viewer:ENSMUSP00000002043.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000002043Re-query CCDS DB by Protein ID:ENSMUSP00000002043
Original member Current member NCBI NM_026009.2 NP_080285.2 Accepted alive Link to Nucleotide Sequence:NM_026009.2Link to Protein Sequence:NP_080285.2Re-query CCDS DB by Nucleotide ID:NM_026009Re-query CCDS DB by Protein ID:NP_080285Link to BLAST:NP_080285.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080285.2 483 Q9D024-1 483 100% 0 0

Chromosomal Locations for CCDS 25551.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106200936 106201016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106202011 106202178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106202384 106202493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106202728 106202786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106203538 106203623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106204921 106205031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106205360 106205461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106208006 106208071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106208195 106208316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106210288 106210462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106211673 106211780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106213081 106213344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGAAAGCCTTCTATGCTTTCTGTGTGGTCCTCTTGGTGTTTGGGAGTGTCTCGGAAGCCAAGTTTGATG
ATTTCGAAGATGAGGAAGACATAGTAGAGTATGATGATAATGATTTTGCTGAGTTTGAGGACGTCATGGA
AGATTCTGTTACGGAGTCGCCTCAGCGAGTGATCAGCACTGAAGATGACGAGGACGAGGCCACCGTGGAG
TTGGAAGGGCAGGATGAAAGCCAAGAAGGTGATTTCGAAGATGCAGATACCCAGGAGGGAGATACAGAAA
GTGAGCCATATGATGATGAGGAATTTGAGGGTTATGAAGACAAACCAGATACCTCTTCTAACAAAAATAA
AGATCCAATAACAATTGTTGATGTTCCTGCACACCTCCAGAACAGTTGGGAGAGTTATTACCTAGAAATT
TTGATGGTGACTGGTCTGCTTGCCTATATCATGAACTACATCATTGGGAAGAATAAAAACAGCCGACTTG
CTCAGGCCTGGTTTAACTCTCATAGAGAGCTTTTGGAGAGCAATTTTACATTAGTGGGGGATGATGGGAC
TAACAAAGAAGCCACAAGCACAGGGAAGTTGAATCAGGAGAATGAGCACATCTATAACCTGTGGTGTTCT
GGCCGAGTGTGCTGTGAAGGCATGCTTATCCAGCTGAGGTTCCTTAAGAGACAAGACTTACTTAATGTCC
TGGCCCGGATGATGAGGCCAGTGAGTGATCAAGTGCAAATAAAAGTAACAATGAATGACGAGGACATGGA
CACATACGTGTTTGCTGTCGGCACTCGCAAAGCTTTGCTGCGACTACAGAAAGAGATGCAGGATCTGAGT
GAGTTTTGCAGTGATAAACCAAAGTCTGGAGCAAAGTATGGACTGCCAGACTCTTTGGCCATTCTGTCAG
AAATGGGAGAAGTCACAGAGGGAATGATGGATACAAAGATGGTTCATTTTCTTACACACTATGCTGATAA
GATTGAATCTGTTCATTTTTCAGACCAGTTCTCTGGTCCAAAGATTATGCAAGAGGAAGGCCAGCCTTTA
AAGCTGCCTGACACCAAGAGGACGCTACTGTTTACATTTAATGTGCCTGGCTCAGGTAACACATACCCAA
AGGATATGGAGTCTTTGCTACCCCTGATGAACATGGTGATTTATTCTATCGATAAAGCCAAAAAGTTCCG
ACTCAACAGAGAAGGGAAACAAAAAGCAGATAAGAACCGGGCTCGTGTGGAAGAGAACTTTCTGAAGCTG
ACACATGTGCAGAGACAGGAGGCTGCACAGTCTCGGCGTGAGGAGAAAAAAAGAGCTGAGAAGGAGCGGA
TCATGAACGAGGAGGACCCTGAGAAACAGCGCAGGCTGGAAGAAGCTGCTTTGAGGAGAGAACAAAAGAA
GTTGGAGAAGAAGCAAATGAAAATGAAACAAATCAAAGTGAAAGCCATGTAG

Translation (483 aa):
MKAFYAFCVVLLVFGSVSEAKFDDFEDEEDIVEYDDNDFAEFEDVMEDSVTESPQRVISTEDDEDEATVE
LEGQDESQEGDFEDADTQEGDTESEPYDDEEFEGYEDKPDTSSNKNKDPITIVDVPAHLQNSWESYYLEI
LMVTGLLAYIMNYIIGKNKNSRLAQAWFNSHRELLESNFTLVGDDGTNKEATSTGKLNQENEHIYNLWCS
GRVCCEGMLIQLRFLKRQDLLNVLARMMRPVSDQVQIKVTMNDEDMDTYVFAVGTRKALLRLQKEMQDLS
EFCSDKPKSGAKYGLPDSLAILSEMGEVTEGMMDTKMVHFLTHYADKIESVHFSDQFSGPKIMQEEGQPL
KLPDTKRTLLFTFNVPGSGNTYPKDMESLLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKL
THVQRQEAAQSRREEKKRAEKERIMNEEDPEKQRRLEEAALRREQKKLEKKQMKMKQIKVKAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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