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Report for CCDS25293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25293.1 Public Mus musculus 11 Hoxb8 23 108 98 CCDS HistoryNCBI Gene:15416Re-query CCDS DB by CCDS ID:25293.1Re-query CCDS DB by GeneID:15416See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052650.3 ENSMUSP00000052496.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052650.3Link to Ensembl Protein Viewer:ENSMUSP00000052496.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052650Re-query CCDS DB by Protein ID:ENSMUSP00000052496
Original member Current member EBI ENSMUST00000168043.1 ENSMUSP00000128136.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168043.1Link to Ensembl Protein Viewer:ENSMUSP00000128136.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168043Re-query CCDS DB by Protein ID:ENSMUSP00000128136
Original member Current member NCBI NM_010461.2 NP_034591.1 Accepted alive Link to Nucleotide Sequence:NM_010461.2Link to Protein Sequence:NP_034591.1Re-query CCDS DB by Nucleotide ID:NM_010461Re-query CCDS DB by Protein ID:NP_034591Link to BLAST:NP_034591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034591.1 243 P09632 243 100% 0 0

Chromosomal Locations for CCDS 25293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96282963 96283386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96284163 96284470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGAGCTCTTATTTCGTCAACTCACTGTTCTCCAAATACAAAACCGGGGAGTCCCTGCGCCCCAATTATT
ATGACTGCGGCTTCGCCCAGGACCTGGGCGGCCGACCCACCGTGGTGTACGGTCCCAGCAGCGGCGGCAG
CTTCCAGCACCCTTCGCAAATCCAGGAGTTCTACCACGGGCCATCGTCGCTGTCCACAGCTCCCTACCAG
CAGAACCCGTGCGCCGTGGCGTGCCACGGCGACCCCGGCAACTTCTACGGCTACGACCCTCTGCAGCGCC
AGAGCCTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGG
CCTGGGCGAGGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGCCCACACAGCTCTTTCCCTGGATGCGCCCT
CAAGCAGCCGCCGGACGCAGGCGAGGCCGCCAGACCTACAGTCGCTACCAGACCCTGGAGCTGGAGAAGG
AGTTCCTATTTAATCCCTATCTGACTCGCAAGCGGAGGATCGAGGTATCGCACGCGCTGGGACTGACAGA
GAGACAGGTCAAAATCTGGTTCCAGAATCGGAGAATGAAGTGGAAAAAGGAGAACAACAAAGACAAGTTT
CCCAGCAGTAAATGCGAGCAGGAGGAGCTGGAGAAAGAGAAGCTGGAGCGGGCACCAGAGACCGCCGAGC
AGGGCGATGCGCAGAAGGGTGACAAGAAGTAG

Translation (243 aa):
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQ
QNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRP
QAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKF
PSSKCEQEELEKEKLERAPETAEQGDAQKGDKK


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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