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Report for CCDS25080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25080.1 Public Mus musculus 11 Git1 23 108 98 CCDS HistoryNCBI Gene:216963Re-query CCDS DB by CCDS ID:25080.1Re-query CCDS DB by GeneID:216963See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25080.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037285.9 ENSMUSP00000037210.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037285.9Link to Ensembl Protein Viewer:ENSMUSP00000037210.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000037285Re-query CCDS DB by Protein ID:ENSMUSP00000037210
Original member Current member NCBI NM_001004144.1 NP_001004144.1 Accepted alive Link to Nucleotide Sequence:NM_001004144.1Link to Protein Sequence:NP_001004144.1Re-query CCDS DB by Nucleotide ID:NM_001004144Re-query CCDS DB by Protein ID:NP_001004144Link to BLAST:NP_001004144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004144.1 770 Q68FF6 770 100% 0 0

Chromosomal Locations for CCDS 25080.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77493583 77493634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77498965 77499098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77499517 77499629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77499739 77499844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77500348 77500565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77500647 77500741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77501072 77501114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77502829 77502855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77503018 77503066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77503356 77503428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77503921 77504018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77504372 77504483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77504599 77504732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77504868 77505251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77505323 77505376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77505504 77505590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77505680 77505753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77505880 77506062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77506179 77506242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77506396 77506608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGTCCCGGAAGGGGCCGCGAGCGGAGGTGTGTGCGGACTGCAGCGCTCCGGACCCTGGCTGGGCATCTA
TCAGCAGAGGTGTGCTGGTTTGTGACGAGTGCTGCAGTGTGCACCGGAGCCTGGGACGACACATCTCCAT
TGTCAAGCACCTGCGCCACAGCGCCTGGCCTCCTACGCTGCTCCAGATGGTGCACACGCTTGCCAGCAAC
GGGGCCAACTCCATCTGGGAGCACTCCCTGCTGGACCCTGCGCAAGTGCAAAGTGGCCGGCGCAAAGCCA
ACCCCCAAGATAAAGTCCACCCCATCAAGTCAGAGTTCATCAGGGCAAAGTACCAGATGCTGGCGTTCGT
GCACAAGCTTCCCTGCCGTGATGATGATGGGGTCACCGCCAAAGACCTCAGCAAGCAACTGCACTCAAGT
GTGCGAACAGGCAACTTGGAAACATGTCTGCGCCTGCTTTCCTTGGGTGCCCAGGCCAACTTTTTTCACC
CAGAAAAGGGCACTACACCTCTACATGTGGCTGCCAAGGCAGGGCAGACACTGCAGGCTGAGCTGCTGGT
AGTGTATGGGGCTGACCCCGGGTCTCCTGATGTCAATGGCCGCACACCCATCGACTATGCCAGGCAGGCG
GGGCACCATGAACTGGCAGAAAGGCTAGTTGAGTGCCAGTATGAGCTCACTGACCGGTTGGCCTTCTATC
TCTGTGGACGAAAGCCTGATCACAAGAATGGGCATTACATCATCCCACAGATGGCTGACAGATCTCGGCA
AAAGTGCATGTCTCAGAGCTTGGATCTGTCTGAATTGGCCAAAGCTGCCAAGAAGAAGCTGCAAGCGCTC
AGCAACCGGCTTTTTGAGGAACTTGCCATGGATGTGTATGATGAGGTGGATCGGAGAGAAAATGATGCTG
TGTGGCTAGCTACCCAAAATCATAGCACCCTGGTGACGGAGCGCAGTGCTGTGCCCTTCCTGCCAGTCAA
CCCTGAATACTCAGCCACTCGGAATCAGGGACGACAGAAATTGGCCCGTTTCAATGCCCGAGAGTTTGCC
ACCTTGATCATCGACATTCTCAGTGAGGCCAAACGGAGGCAGCAGGGCAAGAGTCTAAGCAGCCCCACAG
ACAACCTTGAGCTGTCTGCACGGAGCCAGAGCGAGCTGGATGACCAGCACGACTACGACAGCGTGGCTTC
CGACGAAGACACGGACCAGGAGCCCTTGCCCAGTGCAGGCGCCACGCGGAACAACCGTGCCAGGAGCATG
GACTCCTCAGATCTGTCAGATGGGGCAGTGACACTGCAGGAGTACCTGGAGCTGAAGAAGGCTCTGGCTA
CCTCCGAGGCCAAGGTGCAACAGCTCATGAAGGTCAACAGCAGCCTGAGTGACGAGCTGCGGCGGCTGCA
AAGGGAGATCCACAAATTGCAGGCAGAGAACCTGCAGCTTCGGCAGCCACCCGGACCAGTGCCTCCACCC
TCACTTCCCAGTGAACGGGCAGAACACACCCTCATGGGGCCTGGTGGAAGCACCCACCGCAGGGACCGCC
AGGCCTTCTCTATGTATGAGCCAGGCTCTGCATTGAAGCCCTTTGGAGGTACACCTGGGGACGAGCTCGC
CACCCGGCTCCAGCCTTTCCACAGCACGGAGCTCGAAGACGATGCCATCTACTCAGTGCATGTCCCTGCC
GGCCTTTATCGGATCCGGAAGGGGGTGTCTGCCTCTTCTGTGCCCTTCACTCCCTCCTCCCCACTGCTGT
CGTGCTCCCAAGAAGGAAGTCGCCACGCGAGCAAGCTCTCACGCCACGGCAGTGGTGCGGACAGTGACTA
TGAGAACACACAGAGTGGGGACCCTCTGCTTGGGCTTGAAGGGAAGCGATTCCTAGAGCTGAGCAAGGAG
GATGAGCTGCACCCTGAGCTGGAGAGCTTAGATGGAGACCTCGACCCCGGGCTCCCCAGCACCGAAGACG
TCATCCTAAAGACAGAGCAGGTCACCAAGAACATTCAGGAACTATTGCGGGCAGCCCAGGAGTTCAAACA
TGACAGCTTTGTACCCTGTTCAGAAAAGATACATTTGGCTGTGACTGAGATGGCTTCTCTCTTCCCAAAG
AGGCCAGCCCTGGAGCCTGTGCGCAGTTCACTGCGGCTGCTCAACGCCAGCGCCTACCGGCTTCAGAGCG
AGTGCCGGAAGACAGTGCCTCCAGAGCCGGGCGCCCCTGTGGACTTCCAGCTGCTGACTCAGCAGGTGAT
CCAGTGCGCCTATGACATCGCCAAGGCTGCCAAGCAGCTGGTCACCATCACCACCCGAGAGAAGAAACAG
TGA

Translation (770 aa):
MSRKGPRAEVCADCSAPDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLRHSAWPPTLLQMVHTLASN
GANSIWEHSLLDPAQVQSGRRKANPQDKVHPIKSEFIRAKYQMLAFVHKLPCRDDDGVTAKDLSKQLHSS
VRTGNLETCLRLLSLGAQANFFHPEKGTTPLHVAAKAGQTLQAELLVVYGADPGSPDVNGRTPIDYARQA
GHHELAERLVECQYELTDRLAFYLCGRKPDHKNGHYIIPQMADRSRQKCMSQSLDLSELAKAAKKKLQAL
SNRLFEELAMDVYDEVDRRENDAVWLATQNHSTLVTERSAVPFLPVNPEYSATRNQGRQKLARFNAREFA
TLIIDILSEAKRRQQGKSLSSPTDNLELSARSQSELDDQHDYDSVASDEDTDQEPLPSAGATRNNRARSM
DSSDLSDGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRRLQREIHKLQAENLQLRQPPGPVPPP
SLPSERAEHTLMGPGGSTHRRDRQAFSMYEPGSALKPFGGTPGDELATRLQPFHSTELEDDAIYSVHVPA
GLYRIRKGVSASSVPFTPSSPLLSCSQEGSRHASKLSRHGSGADSDYENTQSGDPLLGLEGKRFLELSKE
DELHPELESLDGDLDPGLPSTEDVILKTEQVTKNIQELLRAAQEFKHDSFVPCSEKIHLAVTEMASLFPK
RPALEPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTREKKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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