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Report for CCDS2495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2495.1 Public Homo sapiens 2 TIGD1 24 110 108 CCDS HistoryNCBI Gene:200765Re-query CCDS DB by CCDS ID:2495.1Re-query CCDS DB by GeneID:200765See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2495.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408957.7 ENSP00000386186.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000408957.7Link to Ensembl Protein Viewer:ENSP00000386186.3Re-query CCDS DB by Nucleotide ID:ENST00000408957Re-query CCDS DB by Protein ID:ENSP00000386186
Original member Current member NCBI NM_145702.4 NP_663748.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145702.4Link to Protein Sequence:NP_663748.1Re-query CCDS DB by Nucleotide ID:NM_145702Re-query CCDS DB by Protein ID:NP_663748Link to BLAST:NP_663748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663748.1 591 Q96MW7 591 100% 0 0

Chromosomal Locations for CCDS 2495.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 232548107 232549882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGGCCTCTAAGTGCTCAAGTGAAAGGAAGAGTCGCACATCTCTCACTTTAAATCAAAAACTAGAAATGA
TT
AAACTGAGTGAGGAAGGTATGTCAAAAGCCGAGATAGGCCGAAGGCTAGGCCTCCTGCGGCAAACAGT
T
AGCCAAGTTGTAAATGCAAAGGAAAAGTTCTTGAAGGAAGTTAAAAGTGCTACTCCAATGAACACACGA
ATG
ATAAGAAAGCGAAACAGCCTTATTGCTGATATGGAGAAGGTTTTAGTGGTCTGGATAGAAGATCAGA
CC
AGCCGCAACATTCCCTTAAGCCAAAGCCTAATCCAGAACAAAGCCCTAACTCTCTTCAACTCTATGAA
A
GCTGAGAGAGGTGTGGAAGCTGCAGAAGAAAAGTTTGAAGCTAGCAGAGGTTGGTTCATGAGGTTTAAG
GAA
AGAAGCCATTTCCATAACATAAAAGCACAAGGTGAAGCAGCAAGTGCTGATGTAGAAGCTGCAGCAA
GT
TATCCAGAAGCTTTAGCTAAGATCATTGACGAAGGTGGCTACACTAAACAACAGATTTTCAATGTAGA
T
GAAACAGCCTTCTATTGGAAGAAGATGCCATCTAGAACTTTCATAGCTAGAGAGGAGAAGTCAGTGCCT
GGC
TTCAAAGCTTCAAAGGACAGGCTGACTCTCTTGTTAGGGGCTAATGCAGCTGGTGACTTTAAGTTGA
AG
CCAATGCTTATTTACCATTCTGAAAATCCTAGGGCCCTTAAGAATTATACTAAATCTACTCTACCCGT
G
CTATATAAATGGAACAGCAAAGCCCGGATGACAGCACATCTGTTTACAGCGTGGTTTACTGAATATTTT
AAA
CCCACTGTTGAGACCTACTGCTCAGAAAAGAAGATTCCTTTCAAAATATTACTGCTCATTGACAATG
CC
CCTAGTCATCCAAGAGCTCTGATGGAGATATACGAGGAGATTAATGTTATTTTCATGCCTGCTAACAC
A
ACATCCATTCTGCAGCCCATGGATCAAGGGGTAATTTCGACCTTCAAGTCTTATTATTTGAGAAATACA
TTT
CATAAGGCTCTAGCTGCCATGGATAGTGATGTCTCTGATGGATCTGGGCAAAGCAAATTGAAAACCT
TC
TGGAAAGGATTCACCATTTTAGATGCCATTAAAAACATTCGTGATTCATGGGAGGAGGTCAAATTGTC
A
ACATTAACAGGAGTTTGGAAGAAGTTGATTCCCACCCTCATTGATGACTATGAGGGGTTCAAGACTTCA
GTG
GAGGAAGTAAGTGCAGATGTGGTGGAAATAGCAAAAGAACTAGAATTAGAAGTAGAGCCTGAAGATG
TA
ACTGAATTGCTGCAATCTCATGATAAAACTTTAACAGATGAGGAGTTGTTTCTTATGGATGCGCAAAG
A
AAGTGGTTTCTTGAGATGGAATCTACACCTGGTGAAGATGCTGTGAACATTGTTGAAATGACAACAAAG
GAT
TTAGAATATTACATAAACTTAGTTGATAAAGCAGCAGCAGGGTTTGAGAGGATTGACTCCAATTTTG
AA
AGAAGCTCTACTGTGGGCAAAATGCTATCAAACAGCATCGCATGCTACAGAGAAATCTTTCATGAAAG
G
AAGAGTCAACTCATGCGAAAAGCTTCACCGATGTCTTATTTTAGGAAATTGCCACAGCCACCCCAACCT
TCA
GCAGCCACCACCCTGACCAGTCAGCAACCATCAACCTCGAGGCAAGACCCTCCACCAGCAAAAAGAG
TA
CGACTCACCGAAGGCTCAGATTGA


Translation (591 aa):
MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKFLKEVKSATPMNTR
M
IRKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTLFNSMKAERGVEAAEEKFEASRGWFMRFK
E
RSHFHNIKAQGEAASADVEAAASYPEALAKIIDEGGYTKQQIFNVDETAFYWKKMPSRTFIAREEKSVP
G
FKASKDRLTLLLGANAAGDFKLKPMLIYHSENPRALKNYTKSTLPVLYKWNSKARMTAHLFTAWFTEYF
K
PTVETYCSEKKIPFKILLLIDNAPSHPRALMEIYEEINVIFMPANTTSILQPMDQGVISTFKSYYLRNT
F
HKALAAMDSDVSDGSGQSKLKTFWKGFTILDAIKNIRDSWEEVKLSTLTGVWKKLIPTLIDDYEGFKTS
V
EEVSADVVEIAKELELEVEPEDVTELLQSHDKTLTDEELFLMDAQRKWFLEMESTPGEDAVNIVEMTTK
D
LEYYINLVDKAAAGFERIDSNFERSSTVGKMLSNSIACYREIFHERKSQLMRKASPMSYFRKLPQPPQP
S
AATTLTSQQPSTSRQDPPPAKRVRLTEGSD




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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