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Report for CCDS23987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23987.1 Public Mus musculus 10 Polrmt 23 108 98 CCDS HistoryNCBI Gene:216151Re-query CCDS DB by CCDS ID:23987.1Re-query CCDS DB by GeneID:216151See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020580.12 ENSMUSP00000020580.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020580.12Link to Ensembl Protein Viewer:ENSMUSP00000020580.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020580Re-query CCDS DB by Protein ID:ENSMUSP00000020580
Original member NCBI NM_172551.3 NP_766139.2 Updated not alive Link to Nucleotide Sequence:NM_172551.3Link to Protein Sequence:NP_766139.2Re-query CCDS DB by Nucleotide ID:NM_172551Re-query CCDS DB by Protein ID:NP_766139
Current member NCBI NM_172551.4 NP_766139.2 Accepted alive Link to Nucleotide Sequence:NM_172551.4Link to Protein Sequence:NP_766139.2Re-query CCDS DB by Nucleotide ID:NM_172551Re-query CCDS DB by Protein ID:NP_766139Link to BLAST:NP_766139.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766139.2 1207 Q8BKF1 1207 100% 0 0

Chromosomal Locations for CCDS 23987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79736234 79736283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79736367 79736443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79736523 79736614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79736734 79736806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79737264 79737362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79737457 79737509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79737600 79737713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79737800 79737886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79738031 79738210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79738328 79738450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79738682 79738804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79739143 79739931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79740144 79740365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79740579 79740749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79740833 79740997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79741127 79741276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79741708 79741894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79741988 79742118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79743178 79743728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79745674 79745772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79746465 79746552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3624 nt):
ATGTCGGCGCTCCGGTGGACCCGAAGCGCAGCCGGGCTTGGCCGGGTTCTGCGCTCCCCTGGGCCCCACC
GCCCGCCTTCGGAGGAAGGGACTTTTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTGCCAGTCCCCG
TGAGCAACATGTCCTGAGGGAGTGGGGCCATGCTGAACTGCTGGAAGTGCTGGAGGCTCGGGTGCGGCAG
CTCCGGGCAGAGGGCACACCTGAGATGAGGGTGAAGAAGGTGCAGGTGGACCGGCCTCCACAGGGCCACA
GCAGCCGCTGGGCGCAAAAGCTAGAGGCTGAGAAAAGGGTGAAGCAGAGGCGCCAAAAGGAAGTTGACCA
GCAGAAGCAAGCCCTCACACAGGAGTTCTGGACCCTTCACAAGGAGCCCAAGATCTGGAACAAGAAGCTG
GCTGGCTACCTGCAGCCAAGCAAGAAGGGAACACCCACGAACTCAGAGGAAAAGCAGCTGGCCCAGGCCC
TTCAGGCTGCTCTGGGGAGGCTCAGCTCCCGTGAGGCAGAGGCCCTGGCCAGGAAGAAAGCCAAGGCGGT
GGAGGCGCAGATCCTGGTCCTCCAGCAGAAGTTCCTGGCTTTCTTTGAGTGCTGCGTCTGCACTGGCCAA
GTGCCCCTCGCTCACCACGTGCTGGTCACTCACCATAACAACGGAGACAGACAGCAGGTGCTCACACTGC
ACATGTACAACACCGTGATGCTTGGCTGGGCCCGCAAGGGCTCCTTCAGAGAGCTGGTCTATGTGTTCCT
CATGCTGAAGGATGCTGGCCTCTCCCCAGACCTGTGCTCCTATGCAGCTGCACTCCAGTGCATGGGACGC
AGGGACCAGGATGTTCGCACCATCCAGAGGTGTCTGAAGCAGATGATGGAAGAAGGCTTCCAGCCCCAGC
TGCTCTTCACTGACCTGGTCCTGGAAGAGGAGGACCGGGCCGCGCTCCTGAGAGCAGTGGTCAAGGCTGA
GCCTGCCTTTCGTCCACCGCCACAGGCCCCAAGCCCAGTTAACACATCCACGCTGCTCAAGGACATATAT
AGCAAGGAGGGCCCTGTGTCCTACCCAAAGCTGCACCTGCCCCTGGACACCCTGCAGGACCTCTTCTACC
AGCAGCTGCATGTGGAGCTGAGCTCCAGTGTCTGTGTCCAGTCGGTGGAGAAGGCTCCAGTAATGTCCAA
GGAGGTCATTGAGGCGCGGAAGACCCTGCAGGCCCTGCGGGAGCAGTGGGAAGTGGAGCTGTTGCGCGTG
CTGCGGGAGACAAAGGCCACTATGGGCCGCCAGGCCTATGAAGGCCAGCCCACCCTCTACCCGTTCCTGT
GCCTGCTGAGCGAAGGGGAGTTTGTGAGCATACTGATGCAGGTTCTGAAGGTCCTGCCTGCGCAGGGTGA
GCCCCTTATCCAGTTGGCCCATAACCTGGGCCTTCGGGTGTTAAACCGGCATTTGGTGAAGCAGAAGCAG
GTCACTAACCATGTGCAGAAGCTGGGGCAGCGGTACTCGCAGTACCTCCAGCTGCTGGCGTCTGACACCC
AGGTGGCGCCCTGCCTTCCTCGGGAGTACTGGGAATCGCTGGGCCCACTGGAGGCCCCTGCACAACAGCC
CTGGTCCGTGCCAGTGCTGCTACAGCTGGGCAAGCAATTGGCGGAGCTGCTGGTGCAGGCAGTGCAGATG
CCGCGCAGCCTGGCGGCCCGGCAGGGTGCTCAGCGCTCCATCCCAGTGCTTTACCATGTGTATTCCTTCC
GAAGCTACCGCCAGGTGGGCATCCTTAAGCCTCACCCTGCCTTCACGCACCTGCTAGAGACGGCAGCAGA
GCCCACACTGACCTTCGAGACCACGGAAGTGCCCATGCTGTGCCCACCACTGCCCTGGACGTCGCTGCAT
TCTGGTGCCTACTTGCTGAGCTCCACCAAACTAATGCGTGCCACGGAGGGTACCACACAGCACCAGCGTC
TGCTGGAGCAATGCCCTCCTGCCCAGCTGCACGGCCCCCTGGATGCGCTCACACAGTTGGGGAACTGCGC
CTGGCGTGTAAACGGGCATCTGCTGGACTTGGTGCTGCAGATCTTTAGAGACAAGGGCTGTATGCCCTTG
GGCGTGCCTCCCCCGCGCTCAGAAGCACCGCGGCCGGCCCGGTATCAGCTGCCACCCGGCTCCACACCAG
TGCACAAGTCTGAGCTGCGGAAGGAGCTGGCGCGTTGCCTCAAGGTGGCTCGAGAGATGCACAGTCTGCG
CAGCGAGGCCCTGTATCGCCTGTCGCTGGCACAGCACCTACGCCACCGTGTCTTCTGGTTGCCGCACAAC
ATGGACTTCCGCGGCCGCACTTACCCCTGCCCGCCACACTTCAACCACCTGGGCAGTGACCTAGCGCGTG
CGCTATTGGAGTTTGCTGAGGGCCGGCCACTGGGACCACGTGGTCTGGACTGGCTTAAGATCCACCTGAT
CAACCTGACTGGCCTCAAGAAGGGAGACTCGCTGCGCATGCGCCTAGCCTTCGCAGATGAGGTCATGGAG
GAGATCTTGGACTCTGCAGACAACCCCTTGACGGGCCGGAAGTGGTGGATGGAAGCTGATGAGCCCTGGC
AGACCCTGGCCTGCTGCATGGAGGTGGCACACGCAGTCCGGTCCCCAGACCCTGCTGCCTACATTTCCCA
CCTGCCAGTTCACCAGGATGGCTCCTGCAATGGCTTACAGCATTACGCCGCACTAGGCCGAGACAGTGTG
GGTGCTGCCTCAGTCAACCTAACGCCGTCCGACCTGCCCCAAGATGTGTACAGGGAGGTGGCAACACAGG
TGGAGGAGTTCCGCCAGCAGGACGCCAAGGAGGGTCTACGGGTGGCTCAGGTGCTGGAGGGCTTCATCAG
CCGCAAGGTGGTGAAGCAGACAGTGATGACGGTGGTGTATGGGGTCACACGCTACGGAGGGCGCCTGCAG
ATAGAGAAGCGCCTGCGCGAACTCAGCGACTTCCCTCAGGAGTTTGTCTGGGAAGCCTCACACTACCTCG
TGCGCCAGGTCTTCAAAAGTCTACAGGAGATGTTCACCAGCACGCGGGCCATTCAGCACTGGCTGACTGA
GAGTGCCAACCTCATCTCTCACGCCGGATGGCCTGTGGAGTGGGTCACGCCCCTGGGCATCCCCATCATA
CAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGG
TAGATGAGAGTCAGAAGCCCAACACTCTGAAGCAGAAAAATGGCTTCCCGCCCAACTTCATCCACTCCCT
GGACTCCTCCCACATGATGCTGACCGCCCTACACTGCTACAGGAAGGGCCTGATTTTCGTCTCCGTGCAC
GACTGCTTCTGGACACATGCCGCTGACATCCCCACGATGAACGAGGTATGCCGCGAGCAATTCGTGCGCC
TGCACAGCCAGCCCATCCTGGAAGACCTGGCCAAGTTCCTGAAGAAGCGTTTCTGCTCCGTGTCCAGCAT
CAAGTCCCTAAAGTCCTCGGAGCGCGCCCTGGTCACCAAGCTGCAGGAGACACTACAGTCCTTGCCAAAG
ACAGGTACCTTCGATCTAGGACAGGTGATAAGATCCACCTACTTTTTCAGCTGA

Translation (1207 aa):
MSALRWTRSAAGLGRVLRSPGPHRPPSEEGTFGGFCSSRRSSAASPREQHVLREWGHAELLEVLEARVRQ
LRAEGTPEMRVKKVQVDRPPQGHSSRWAQKLEAEKRVKQRRQKEVDQQKQALTQEFWTLHKEPKIWNKKL
AGYLQPSKKGTPTNSEEKQLAQALQAALGRLSSREAEALARKKAKAVEAQILVLQQKFLAFFECCVCTGQ
VPLAHHVLVTHHNNGDRQQVLTLHMYNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGR
RDQDVRTIQRCLKQMMEEGFQPQLLFTDLVLEEEDRAALLRAVVKAEPAFRPPPQAPSPVNTSTLLKDIY
SKEGPVSYPKLHLPLDTLQDLFYQQLHVELSSSVCVQSVEKAPVMSKEVIEARKTLQALREQWEVELLRV
LRETKATMGRQAYEGQPTLYPFLCLLSEGEFVSILMQVLKVLPAQGEPLIQLAHNLGLRVLNRHLVKQKQ
VTNHVQKLGQRYSQYLQLLASDTQVAPCLPREYWESLGPLEAPAQQPWSVPVLLQLGKQLAELLVQAVQM
PRSLAARQGAQRSIPVLYHVYSFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLH
SGAYLLSSTKLMRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPL
GVPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLRHRVFWLPHN
MDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLTGLKKGDSLRMRLAFADEVME
EILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYISHLPVHQDGSCNGLQHYAALGRDSV
GAASVNLTPSDLPQDVYREVATQVEEFRQQDAKEGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQ
IEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPII
QPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVH
DCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPK
TGTFDLGQVIRSTYFFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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