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Report for CCDS23118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23118.1 Public Mus musculus 9 Phldb1 23 108 98 CCDS HistoryNCBI Gene:102693Re-query CCDS DB by CCDS ID:23118.1Re-query CCDS DB by GeneID:102693See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034611.14 ENSMUSP00000034611.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034611.14Link to Ensembl Protein Viewer:ENSMUSP00000034611.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034611Re-query CCDS DB by Protein ID:ENSMUSP00000034611
Original member NCBI NM_153537.4 NP_705765.3 Updated not alive Link to Nucleotide Sequence:NM_153537.4Link to Protein Sequence:NP_705765.3Re-query CCDS DB by Nucleotide ID:NM_153537Re-query CCDS DB by Protein ID:NP_705765
Current member NCBI NM_153537.5 NP_705765.3 Accepted alive Link to Nucleotide Sequence:NM_153537.5Link to Protein Sequence:NP_705765.3Re-query CCDS DB by Nucleotide ID:NM_153537Re-query CCDS DB by Protein ID:NP_705765Link to BLAST:NP_705765.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705765.3 1371 Q6PDH0-1 1371 100% 0 0

Chromosomal Locations for CCDS 23118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44687558 44687698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44688617 44688702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44694029 44694131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44694374 44694490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44696037 44696183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44697752 44697842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44697926 44698220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44699347 44699449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44699556 44699696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44700946 44701086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44703803 44703892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44704061 44704171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44707885 44708040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44710923 44711060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44711148 44711288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44711641 44711922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44715314 44716665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44718274 44718399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44726010 44726180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44727051 44727174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44728020 44728079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4116 nt):
ATGGATCCTCTCAATAGGAGCCAGCTAGGCCCTGGATGCAAGACCCAGGCTGTAGTGCAGAAAGGGCCAT
TGGATCTGATTGAGACGGGTCAAGGACTGAAGGTGCAGACGGACAAACCTCATCTGGTGAGCCTGGGCAG
CGGGAGACTCAGCACAGCGATCACTCTCCTGCCGCTGGAGGAAGGGAGGACAGTCATTGGTTCTGCAGCC
AGGGACATCTCACTGCAGGGTCCAGGCCTGGCTCCAGAACACTGCTACATCGAGAATCTGCGGGGCACTC
TCACCCTGTACCCTTGTGGCAATGCCTGCACTATTGATGGGCTCCCTGTTCGGCAGCCCACCCGGCTCAC
TCAGGGCTGCATGTTGTGTCTGGGTCAATCCACCTTCCTGCGCTTTAACCATCCAGCCGAAGCCAAGTGG
ATGAAAAGTATGATTCCAGCAGGGGTCCGGGCCCCAGGGCCCACCTACAACCCTGGCTCTGCTGAATCGG
AGAGCCTGGTCAATGGGAACCACACAGCACAACCTGCAACCCGGGCACCGTCAGCCTGTGCCAGCCACAG
TTCCCTGGTGAGCTCTATTGAAAAGGACCTGCAGGAAATCATGGATTCATTGGTGCTAGAGGAGCCTGGA
GCTGCAGGCAAGAAGCCTGCTGCCACATCCCCATTGTCGCCAATGGCTAACGGCGGGCGCTACCTGTTGT
CCCCTCCAACCAGCCCCGGTGCCATGTCTGTGGGCTCCAGCTATGAGAACACCTCTCCAGCCTTCTCTCC
ACTTTCCTCACCAGCCAGCAGCGGAAGCTGTGCTAGCCATTCACCAAGTGGGCAGGAGCCAGGACCCTCT
GTGCCCCCATTGGTGCCTGCCCGCTCCTCTAGCTACCATTTGGCTCTGCAACCTCCACAGTCTCGCCCAA
GTGGTTCCCGCTCCTCTGACAGTCCCCGGCTGGGCAGAAAAGGGGGTCATGAGAGACCTCCCAGCCCTGG
TCTCCGGGGTCTTCTGACGGACAGTCCTGCCGCTACCGTCTTGGCTGAGGCCCGCAGAACCACTGAGAGT
CCCCGGCTAGGTGGGCAGTTACCTGTGGTGGCTATCAGCCTGAGTGAATACCCATCTTCCGGTGCCCGCA
GCCAACCCGCCAGTATTCCTGGCAGCCCCAAGTTCCAGTCTCCAGTGCCTGCTCCCCGAAACAAGATCGG
CACACTCCAGGACCGCCCTCCCAGTCCTTTCCGTGAGCCCCCAGGCACAGAGCGGGTACTAACAAGCAGC
CCCTCTCGACAACTGGTGGGCAGAACATTTTCGGATGGGTTAGCAGCAACTCGTACCCTCCAGCCGCCTG
AGAGTCCCCGCCTGGGCCGGAGGGGCCTGGACAGTATGCGGGAACTGCCCCCGTTGAGTCCATCTCTGTC
TCGAAGGGCTCTGTCCCCACTGCCAGCCCGGACTGCCCCAGATCCCAAGCTAAGCAGGGAAGTGGCCGAG
AGTCCCCGGCCCCGGCGCTGGGCAGCCCACGGGACTTCACCTGAGGACTTCTCCCTGACTCTAGGAGCAC
GGGGTCGCAGGACTCGGAGTCCCTCGCCCACCCTCGGGGAGTCCCTGGCACCTCGCAAGGGTAGCTTCAG
TGGCAGGCTGAGCCCAGCTTACAGTCTGGGCTCTCTTACTGGGGCTTCACCTCGTCAGAGCCCCCGTGCT
CAGCGGAAGCTCTCCAGTGGGGACTTGCGGGTACCCATTCCAAGGGAGAGGAAAAACAGCATCACGGAGA
TCAGCGACAATGAGGACGAACTTCTGGAGTACCACCGTCGGCAGCGCCAAGAGCGGCTCCGGGAGCAGGA
GATGGAGAGGCTGGAACGCCAGCGCCTGGAGACCATCCTGAACCTGTGTGCTGAGTACAGCCGAGCTGAC
GGGGGACCTGAGACTGGGGAGCTGCCCAGTATTGGAGAGGCCACGGCAGCGCTGGCCTTGGCAGGCAGGA
GGCCCTCAAGAGGCTTGGCAGGAGCCATAGTAGTCTCCGGAAGGTGCGGCGAGGAGTCTGGAGGTGCCTC
CCAGCGCCTGTGGGAGAGCATGGAGCGCTCTGATGAAGAGAATCTCAAAGAGGAATGCAGCAGCACCGAG
AGCACCCAGCAGGAGCATGAAGACGCTCCTGGCGCGAAGCACCAAGGCGAGGTGCTGGCTGTGGAAGAGG
AGCGGGCTCAGGTTCTGGGGCGAGTAGAACAGCTGAAGATCCGAGTGAAGGAGCTGGAACAGCAGCTGCA
GGAGGCAGCCCGAGAGGCCGAGATGGAGAGAGCACTGCTGCAGGGGGAGCGGGAGGCAGAGCGAGCCTCG
CTGCAGAAGGAACAAAGGGCGGTGGACCAGCTGCAGGAGAAGTTGGTGGCCTTGGAGACAGGCATCCAGA
AGGACAGGGACAAGGAGGCAGACGCTCTAGAGACTGAGACAAAGCTCTTTGAGGACCTGGAGTTCCAGCA
GCTGGAGCGTGAGAGTCGCGTGGAGGAGGAGCGGGAGCTGGCCGGCCAAGGGCTGCTGCGGAGCAAGGCT
GAGTTGCTGCGCAGTGTGAGCAAGAGGAAGGAGCGCCTAGCTGTACTGGACAGTCAGGCTGGGCAGATCC
GGGCCCAGGCAGTACAGGAGTCAGAGCGTCTGGCCCGGGAAAAGAATGCTGCCCTGCAGCTACTGCAAAA
GGAGAAGGAGAAGCTGAATGTCCTTGAGAGGAGATACCATTCGCTCACGGGGGGCAGGCCTTTTCCGAAG
ACCACCTCCACCCTCAAAGAGATGGAGAAGCTGCTGCTCCCTGCTGTAGACTTAGAGCAGTGGTACCAGG
AGTTGATGTCCGGGCTGGGGACTGGCCTTGCTGCAGCCTCCCCTCGCTCCTCTCCCCCGCCTTTGCCTGC
CAAAGCTTCCCGTCAGCTGCAGGTTTACCGCTCCAAGATGGATAGTGATGCGGCCAGCCCCCTGCCCAGG
ACCCGTAGCGGCCCTCTCCCCTCCTCCTCAGGCTCCTCCTCCTCCTCTTCACAGCTCAGCGTGGCTACCC
TGGGCCGTAGTCCTTCCCCAAAGAGTGCTCTGCTCGCCCAGAATGGCACCAGTAGCCTTCCTCGCAACCT
GGCAGCCACACTGCAGGACATTGAGACCAAGCGCCAGCTGGCCCTACAGCAAAAGGGACACCAAGTGATC
GAGGAGCAACGGAGGAGACTGGCGGAGCTGAAGCAGAAGGCGGCGGCAGAGGCTCAGTGCCAGTGGGATG
CCTTGCATGGTGCAGGGCCCTTTTCAGCAGGCCCTTCAGGCTTCCCTGCACTCATGCATCATTCCATCCT
GCATCACCTGCCAGCTGGCCGGGAGCGTGGAGAGGAGGGCGAGCACGCTTACGACACCCTGAGCCTGGAG
AGTTCAGACAGCATGGAGACCAGCATCTCTACAGGCGGCAACTCTGCCTGTTCCCCGGACAACATGTCCA
GCGCCAGTGGTCTGGACATGGGCAAGATCGAGGAAATGGAGAAGATGCTAAAGGAAGCTCACGCAGAGAA
GAGCCGGCTCATGGAGTCCAGGGAGCGGGAGATGGAGCTTCGGAGGCAGGCCCTGGAGGAGGAACGGAGG
AGGCGGGAGCAAGTGGAGCGGCGGCTGCAGAGTGAGAGCGCCCGCAGGCAGCAGCTGGTGGAGAAAGAAG
TCAAGCTCCGGGAAAAGCAGTTCTCCCAGGCACGGCCTCTTACACGTTACCTTCCCAACCGGAAGGAGGA
CTTTGATCTGAAGACCCACATAGAGTCATCAGGCCACGGGGTGGACACCTGCCTACATGTGGTGCTTAGC
AGCAAGGTGTGCCGTGGCTACCTGATCAAGATGGGTGGCAAGATTAAATCGTGGAAGAAGCGCTGGTTTG
TCTTTGATCGGCTGAAGCGCACCCTTTCCTATTACGTGGACAAACATGAGACGAAGCTGAAGGGGGTCAT
CTATTTCCAGGCCATCGAGGAAGTGTACTATGACCACCTGCGCAGCGCAGCCAAGAGTCCGAATCCGGCC
CTCACCTTCTGTGTGAAGACCCATGACCGGTTGTACTACATGGTGGCCCCGTCTGCAGAGGCCATGCGCA
TCTGGATGGATGTCATCGTCACGGGGGCCGAGGGCTACACTCAATTCATGAACTAA

Translation (1371 aa):
MDPLNRSQLGPGCKTQAVVQKGPLDLIETGQGLKVQTDKPHLVSLGSGRLSTAITLLPLEEGRTVIGSAA
RDISLQGPGLAPEHCYIENLRGTLTLYPCGNACTIDGLPVRQPTRLTQGCMLCLGQSTFLRFNHPAEAKW
MKSMIPAGVRAPGPTYNPGSAESESLVNGNHTAQPATRAPSACASHSSLVSSIEKDLQEIMDSLVLEEPG
AAGKKPAATSPLSPMANGGRYLLSPPTSPGAMSVGSSYENTSPAFSPLSSPASSGSCASHSPSGQEPGPS
VPPLVPARSSSYHLALQPPQSRPSGSRSSDSPRLGRKGGHERPPSPGLRGLLTDSPAATVLAEARRTTES
PRLGGQLPVVAISLSEYPSSGARSQPASIPGSPKFQSPVPAPRNKIGTLQDRPPSPFREPPGTERVLTSS
PSRQLVGRTFSDGLAATRTLQPPESPRLGRRGLDSMRELPPLSPSLSRRALSPLPARTAPDPKLSREVAE
SPRPRRWAAHGTSPEDFSLTLGARGRRTRSPSPTLGESLAPRKGSFSGRLSPAYSLGSLTGASPRQSPRA
QRKLSSGDLRVPIPRERKNSITEISDNEDELLEYHRRQRQERLREQEMERLERQRLETILNLCAEYSRAD
GGPETGELPSIGEATAALALAGRRPSRGLAGAIVVSGRCGEESGGASQRLWESMERSDEENLKEECSSTE
STQQEHEDAPGAKHQGEVLAVEEERAQVLGRVEQLKIRVKELEQQLQEAAREAEMERALLQGEREAERAS
LQKEQRAVDQLQEKLVALETGIQKDRDKEADALETETKLFEDLEFQQLERESRVEEERELAGQGLLRSKA
ELLRSVSKRKERLAVLDSQAGQIRAQAVQESERLAREKNAALQLLQKEKEKLNVLERRYHSLTGGRPFPK
TTSTLKEMEKLLLPAVDLEQWYQELMSGLGTGLAAASPRSSPPPLPAKASRQLQVYRSKMDSDAASPLPR
TRSGPLPSSSGSSSSSSQLSVATLGRSPSPKSALLAQNGTSSLPRNLAATLQDIETKRQLALQQKGHQVI
EEQRRRLAELKQKAAAEAQCQWDALHGAGPFSAGPSGFPALMHHSILHHLPAGRERGEEGEHAYDTLSLE
SSDSMETSISTGGNSACSPDNMSSASGLDMGKIEEMEKMLKEAHAEKSRLMESREREMELRRQALEEERR
RREQVERRLQSESARRQQLVEKEVKLREKQFSQARPLTRYLPNRKEDFDLKTHIESSGHGVDTCLHVVLS
SKVCRGYLIKMGGKIKSWKKRWFVFDRLKRTLSYYVDKHETKLKGVIYFQAIEEVYYDHLRSAAKSPNPA
LTFCVKTHDRLYYMVAPSAEAMRIWMDVIVTGAEGYTQFMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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