NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2123.1 Public Homo sapiens 2 EN1 24 110 108 CCDS HistoryNCBI Gene:2019Re-query CCDS DB by CCDS ID:2123.1Re-query CCDS DB by GeneID:2019See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2123.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295206.7 ENSP00000295206.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295206.7Link to Ensembl Protein Viewer:ENSP00000295206.5Re-query CCDS DB by Nucleotide ID:ENST00000295206Re-query CCDS DB by Protein ID:ENSP00000295206
Original member Current member NCBI NM_001426.4 NP_001417.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001426.4Link to Protein Sequence:NP_001417.3Re-query CCDS DB by Nucleotide ID:NM_001426Re-query CCDS DB by Protein ID:NP_001417Link to BLAST:NP_001417.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001417.3 392 Q05925 392 100% 0 0

Chromosomal Locations for CCDS 2123.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118842938 118843254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118846306 118847167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGAAGAACAGCAGCCGGAACCTAAAAGTCAGCGCGACTCGGCCCTCGGCGCGGCGGCGGCGGCGACTC
CG
GGCGGCCTCAGCCTGAGCCTCAGTCCGGGCGCCAGCGGCAGCAGCGGCAGCGGCAGCGATGGAGACAG
C
GTGCCGGTGTCCCCGCAGCCTGCGCCCCCCTCGCCGCCCGCGGCGCCTTGCCTGCCGCCCCTGGCCCAC
CAC
CCGCACCTCCCCCCACACCCCCCGCCCCCGCCGCCTCAGCATCTCGCGGCGCCTGCTCACCAGCCGC
AG
CCAGCGGCCCAGCTGCACCGCACCACCAACTTTTTCATCGACAACATCCTGAGGCCGGACTTCGGCTG
C
AAAAAGGAGCAGCCGCCACCGCAGCTTCTGGTGGCTGCGGCGGCCAGAGGAGGCGCAGGAGGAGGAGGC
CGG
GTCGAGCGTGACAGAGGCCAGACTGCCGCAGGTAGAGACCCTGTCCACCCGTTGGGCACCCGGGCGC
CA
GGCGCTGCCTCGCTCCTGTGCGCCCCGGACGCGAACTGTGGCCCACCCGACGGCTCCCAGCCAGCCGC
C
GCCGGCGCGGGCGCGTCTAAAGCTGGGAACCCGGCTGCGGCGGCGGCGGCGGCCGCGGCGGCAGTGGCG
GCG
GCGGCGGCGGCCGCAGCAGCCAAGCCCTCGGACACCGGTGGCGGCGGCAGTGGAGGCGGCGCGGGGA
GC
CCCGGAGCGCAGGGCACCAAATACCCGGAGCACGGCAACCCGGCTATCCTACTTATGGGCTCAGCCAA
C
GGCGGGCCCGTGGTCAAAACTGACTCGCAGCAGCCTCTCGTATGGCCCGCCTGGGTGTACTGCACACGT
TAT
TCGGATCGTCCATCCTCCGGTCCGCGCACCAGGAAGCTGAAGAAGAAGAAGAACGAGAAGGAGGACA
AG
CGGCCGCGGACCGCGTTCACGGCCGAGCAGCTGCAGAGACTCAAGGCGGAGTTCCAGGCAAACCGCTA
C
ATCACGGAGCAGCGGCGGCAGACCCTGGCCCAGGAACTCAGCCTCAACGAGTCCCAGATCAAGATCTGG
TTC
CAGAACAAGCGCGCCAAGATCAAGAAAGCCACAGGCATCAAGAACGGCCTGGCGCTGCACCTCATGG
CC
CAGGGACTGTACAACCACTCCACCACCACGGTCCAGGACAAAGACGAGAGCGAGTAG


Translation (392 aa):
MEEQQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLPPLAH
H
PHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGAGGGG
R
VERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVA
A
AAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTR
Y
SDRPSS
GPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIW
F
QNKRAKIKKATGIKNGLALHLMAQGLYNHSTTTVQDKDESE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser