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Report for CCDS20392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20392.1 Public Mus musculus 6 Pdzrn3 23 108 98 CCDS HistoryNCBI Gene:55983Re-query CCDS DB by CCDS ID:20392.1Re-query CCDS DB by GeneID:55983See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075994.10 ENSMUSP00000075376.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075994.10Link to Ensembl Protein Viewer:ENSMUSP00000075376.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075994Re-query CCDS DB by Protein ID:ENSMUSP00000075376
Original member Current member NCBI NM_018884.2 NP_061372.2 Accepted alive Link to Nucleotide Sequence:NM_018884.2Link to Protein Sequence:NP_061372.2Re-query CCDS DB by Nucleotide ID:NM_018884Re-query CCDS DB by Protein ID:NP_061372Link to BLAST:NP_061372.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061372.2 1063 Q69ZS0-1 1063 100% 0 0

Chromosomal Locations for CCDS 20392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 101150512 101152068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 101153219 101153335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 101154194 101154295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 101155870 101155932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 101156914 101157012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 101169134 101169221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 101172200 101172447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 101354394 101354501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 101362139 101362225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 101377166 101377888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3192 nt):
ATGGGTTTCGAGTTGGATCGCTTCGACGGCGACGTGGACCCTGATCTGAAGTGCGCCTTGTGCCACAAGG
TCCTGGAGGACCCGCTGACCACCCCGTGCGGCCACGTATTCTGCGCCGGCTGCGTGCTGCCCTGGGTAGT
GCAGGAGGGCAGCTGCCCCGCGCGTTGTCGCGGTCGCCTATCGGCCAAGGAGCTCAACCACGTCCTGCCC
CTCAAGCGTCTCATCCTCAAGTTGGACATCAAGTGCGCGCACGCGGCGCGGGGCTGCGGCCGGGTGGTCA
AGTTGCAGGACTTGCCCGAGCACCTGGAGCGCTGCGACTTCGCGCCCGCGCGCTGCCGCCACGCGGGCTG
CGGCCAGCTGCTGCTGCGACGCGACGTGGAGGCCCACATGCGCGACGCGTGCGACGCGCGGCCCGTGGGT
CGCTGCCAGGAGGGCTGCGGGCTGCCGCTGACGCACGGCGAGCAGCGGGCGGGCGGCCACTGCTGCGCGC
GGGCTCTGCGGGCGCACAACGGAGCGCTGCAGGCCCGCCTGGGCGCGCTGCACAAGGCGCTCAAGAAGGA
GGCGCTGCGGGCCGGCAAGCGCGAGAAGTCGCTGGTGGCGCAGCTGGCCGCCGCGCAGCTCGAACTGCAG
ATGACCGCGCTGCGCTACCAGAAGAAGTTCACCGAGTACAGCGCGCGCCTCGACTCGCTCAGCCGCTGCG
TGGCCGCGCCGCCAGGCGGCAAGGGAGAAGAGACCAAAAGCCTGACTCTTGTCCTGCATCGGGACTCTGG
CTCCCTGGGATTCAATATCATTGGCGGCCGACCCTGTGTGGACAATCAAGATGGATCCTCCAGTGAAGGA
ATCTTTGTATCCAAAATAGTTGACAGCGGGCCTGCTGCCAAGGAAGGAGGCCTGCAAATTCATGACAGGA
TTATTGAGGTCAACGGCAAAGACTTATCCCGAGCAACTCATGACCAGGCTGTGGAAGCTTTCAAGACAGC
CAAGGAGCCCATTGTGGTGCAGGTGTTGAGGAGGACACCTCGAACCAAGATGTTCACGCCTGCCTCAGAG
TCGCAGCTGGTAGACACGGGCACCCAAACCGACATCACCTTTGAGCACATCATGGCCCTGACAAAGATGT
CTTCTCCCAGCCCACCTGTGCTAGACCCCTACCTGCTGCCTGAAGAGCATCCCGCATCCCATGACTACTA
TGATCCCAATGACTACATGGGGGATATCCATCAGGACATGGACAGAGAAGAGCTGGAGCTGGAAGAAGTG
GGCCTCTACAGGATGAACAGCCAGGACAAGCTGGGTCTCACTGTGTGCTACCGGACGGATGACGAAGATG
ACATTGGGATATATATAAGTGAGATTGACCCTAACAGCATTGCAGCCAAGGATGGACGGATCCGTGAAGG
AGATCGCATCATCCAGATTAATGGCATCGAAGTACAGAACCGTGAAGAGGCCGTGGCGCTTCTAACCAGT
GAAGAAAACAAGAACTTTTCATTGCTGATTGCAAGGCCTGAGCTCCAGCTGGATGAGGGCTGGATGGACG
ACGACAGGAACGACTTCCTGGATGACTTACACATGGACATGCTGGAGGAACAGCATCACCAGGCCATGCA
GTTCACCGCCAGTGTGCTCCAGCAGAAGAAGCATGAGGAAGACGGTGGGACCACAGACACAGCCACCATC
TTATCCAACCAGCACGAGAAAGACAGTGGTGTCGGGCGAACGGATGAGAGCACCCGCAATGATGAGAGCT
CAGAACAGGAGAATAACGGTGAAGATGCTACGGCATCCGCCAACCCGCTGGCAGGCCAGAGGAAGCTGAC
CTGTAGCCAGGACACCCTGGGCAGTGGCGACCTGCCTTTCAGCAATGAGTCCTTCATCTCTGCGGACTGT
ACCGATGTGGACTACCTGGGCATCCCAGAGGATGAGTGCGAGCGTTTTCGCGAACTGCTGGAGCTCAAGT
GCCAAGTGCAGAGCGCCAGCCCCTACAGCCTGTACTACCCTAGCAGCCCACTGGATGCTGCTGGCAAGAG
TGACCCCGAGAGCGTGGACAAGGAGCTGGAGCTACTCAATGAGGAGTTGCGCAGCATCGAGCTGGAGTGC
CTGAGCATCGTGCGCGCGCACAAGATGCAACAGCTCAAGGAACAGTACCGTGAGTCCTGGATGCTGCACC
ACAGTGGCTTCCGCAACTACAACACCAGTGTGGACGTGCGCCGCCATGAGCTCTCGGACATCACTGAGCT
GCCGGAGAAGTCAGACAAGGATAGTTCAAGCGCCTACAACACGGGGGAGAGCTGCAGAAGTACCCCACTC
ACCCTGGAGATCTCTCCGGACAACTCCCTGCGGAGAGTAGCCGAGGGCAGTAGTGAAGGGGCCACAGCTA
ACATCGAAGCTTACAGGCCATCCCCCAAGAATCTGCTCGCCATCACTGAGGACCCTGAAGTAAGCACCCC
AAGCTATAACCCTAGTGCCAAAGAGCTGGACCCCAGCCAGGCTTTGGAGATCAAAGAACGCCGAGGTAGC
GATGGCAGCAGGAGCCCCACCGCCAGCCCAAAGCTGGGCAATGCCTACCTGCCCTCATACCACCACTCCC
CCTACAAACACGCGCACATCCCAGCTCACGCGCAACACTACCAGAGCTACATGCACCTGATCCAGCAGAA
GTCAGCAGTGGAGTATGCGCAGAGCCAGATGAGCCTGGTGAGCATGTGCAAGGACTTGAACTCTTCTAAC
TCTGTGGAACCCAGGATGGAATGGAAAGTGAAGATCCGCAGTGACGGGACGCGCTACATCACCAAGAGGC
CGGTGCGTGACAGGCTGCTGCGGGAGCGTGCGCTGAAGATCCGCGAGGAGCGCAGTGGCCTGACCACGGA
TGATGACGCCATGAGTGAGATGAAGATGGGGCGCTACTGGAGCAAGGAGGAGCGCAAGCAACATCTGGTG
AAGGCCAAGGAGCAGAGGCGGAGGCGCGAGTTTATGATGCAGAGCAGGCTGGATTGTCTGAAGGAGCAGC
AGGCCTCCGACGACAGGAAGGAGATGAACATCCTGGAACTGAGCCACAAAAAGATGATGAAGAAGAGGAA
CAAAAAGATCTTTGACAATTGGATGACTATCCAAGAACTCTTAACCCACGGCACAAAATCGCCAGACGGC
ACTAGGGTATACAATTCCTTCCTGTCGGTGACTACTGTATAA

Translation (1063 aa):
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVLP
LKRLILKLDIKCAHAARGCGRVVKLQDLPEHLERCDFAPARCRHAGCGQLLLRRDVEAHMRDACDARPVG
RCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGALHKALKKEALRAGKREKSLVAQLAAAQLELQ
MTALRYQKKFTEYSARLDSLSRCVAAPPGGKGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEG
IFVSKIVDSGPAAKEGGLQIHDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPASE
SQLVDTGTQTDITFEHIMALTKMSSPSPPVLDPYLLPEEHPASHDYYDPNDYMGDIHQDMDREELELEEV
GLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTS
EENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHEEDGGTTDTATI
LSNQHEKDSGVGRTDESTRNDESSEQENNGEDATASANPLAGQRKLTCSQDTLGSGDLPFSNESFISADC
TDVDYLGIPEDECERFRELLELKCQVQSASPYSLYYPSSPLDAAGKSDPESVDKELELLNEELRSIELEC
LSIVRAHKMQQLKEQYRESWMLHHSGFRNYNTSVDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPL
TLEISPDNSLRRVAEGSSEGATANIEAYRPSPKNLLAITEDPEVSTPSYNPSAKELDPSQALEIKERRGS
DGSRSPTASPKLGNAYLPSYHHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMSLVSMCKDLNSSN
SVEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDAMSEMKMGRYWSKEERKQHLV
KAKEQRRRREFMMQSRLDCLKEQQASDDRKEMNILELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDG
TRVYNSFLSVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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