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Report for CCDS20321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20321.1 Public Mus musculus 6 Arhgap25 23 108 98 CCDS HistoryNCBI Gene:232201Re-query CCDS DB by CCDS ID:20321.1Re-query CCDS DB by GeneID:232201See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20321.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113637.8 ENSMUSP00000109267.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113637.8Link to Ensembl Protein Viewer:ENSMUSP00000109267.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113637Re-query CCDS DB by Protein ID:ENSMUSP00000109267
Original member Current member NCBI NM_001037727.2 NP_001032816.1 Accepted alive Link to Nucleotide Sequence:NM_001037727.2Link to Protein Sequence:NP_001032816.1Re-query CCDS DB by Nucleotide ID:NM_001037727Re-query CCDS DB by Protein ID:NP_001032816Link to BLAST:NP_001032816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032816.1 648 Q8BYW1-1 648 100% 0 0

Chromosomal Locations for CCDS 20321.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87459920 87460133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87462931 87463463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87465501 87465697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87466473 87466594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87467913 87467986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87470513 87470645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87476143 87476350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87488192 87488308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87492178 87492265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87495913 87496112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87532826 87532886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGTCTCTCAAGCTGCCAAGGAACTGGGATTTCAATTTGAAAGCGGAGGCTTCAAAAATAGCTCGGTCGA
GGAGTGTGATGACCGGGGAGCAGATGGCGGCCTTTCACCCACCCACCACTCCCAACCCCCTGGAAAGGCC
AATTAAGGTGGGCTGGCTGAAGAAGCAGAGGTCCATCGTGAAAAACTGGCAGCAGCGGTACTTTGTGTTG
AGAGCTCAGCAACTCTACTACTACAAGGACGAAGAGGACTCAAAGCCACAGGGCTGCATGTATCTGCCAG
GCAGTACAGTCAAAGAAATTGCCACAAACCCCGAAGAAGCTGGGAAATTTGTCTTTGAAGTTATTCCAGC
CTCAAGTGACCAGAACCGCATTGGACAAGACTCCTACGTCCTCATGGCCAGCTCCCAGGTAGAGATGGAG
GAGTGGGTTAAGTTCCTCAGGAGAGTTGCTGGCACGCCCTCTGGAGCGGTGTTTGGCCAGCGTCTGGATG
AGACTGTGGCCTATGAGCAGAAGTTTGGCCCTCACCTGGTGCCCATCTTGGTGGAGAAGTGCGCTGAGTT
CATCCTGGAACATGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAG
CTGAGAGATGCTTTCGATGCGGGGGAGCGGCCCTCCTTTGACAGGGACACAGATGTGCACACGGTGGCAT
CTCTACTAAAGCTCTACCTCCGAGACCTGCCAGAGCCTGTGGTTCCTTGGAGTCAGTATGAAGGGTTCCT
GCTCTGTGGGCAGCTCATGAACGCAGATGAGGCAAAGGCTCAGCAGGAGTTGGTGAAGCAGCTTTCTACC
CTTCCCCGAGACAACTACAACCTCCTGAGCTACATCTGCAGATTTCTGCATGAAATCCAGCTGAACTGTG
CCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACCTCATCAGGTCGAAGGTTGA
AGACCCAGCTGTGATTATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACCATGATGATCAGAGACCAC
GAAGTCCTCTTCCCCAAGTCTAAGGATGCACCGATCTCACCCCCTGCCCAGAAAAACGATGCCAAGAAGG
CTCCAGTGCCGCGAAGCTCTGTGGGGTGGGATGCCACGGAAGACCCACCCCTTTCTAGGACAGACAGCTT
CAGTAACACAGCAAGTAGTCCTGATGCCACCAGTCCCACTGGACCACTGCCCAGTGACCAGCATCAGGAA
GACAGCGGAAAAGCCCCCAGGGAAAACCCAGGAGACTGGAAGATGCAATCCCGTAAAAGGACTCAAACGC
TTCCCAACCGGAAGTGTTTCCTGACGTCCGCATTCCAAGGCACCACCAGCAGTAAACTGGAAATCTTTAA
AAATGAGTTCTGGTCTCCATCTTCAGAGGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGAC
TTGCGCCACCTTTCCAATGACCAGCGGACTTCTACCTACGATAATGTCCCCACCTCACCACAGTCCCAAG
GGAACCCAGCAGGTGCACTCTCTCCCCCTGCCAGTGACTCCAAGAGAGATGCTCTTGTTAGCACAGACTC
TGAAATGGAGGCTGGAAGCAAGAACTCTGGCGAGGATGACCTTGATTCTCTGCAGAGGACAGTCCAGAGC
CTACAGAAGGAAATAGAAACCCAGAAGCAGGTCTATGAGGAACAGATTAAAAACCTGGAGAAGGAAAATT
ACGATGTCTGGGCTAAGGTGGTGAGGCTCAATGAAGAACTCGAGAGGGAGAGGAAGAAATTCGCGGCCCT
GGAAATCAGCCTTCGAAATGTGGAGCGCTCCCGGGAGGACGTTGAGAAGAGGAACAGAGTCTTGGAAGAA
GAAGTCAAGGAGTTTGTGAAGTCGATGGAGAAGCCCAAGACAAAGACGGATCCTTGA

Translation (648 aa):
MSLKLPRNWDFNLKAEASKIARSRSVMTGEQMAAFHPPTTPNPLERPIKVGWLKKQRSIVKNWQQRYFVL
RAQQLYYYKDEEDSKPQGCMYLPGSTVKEIATNPEEAGKFVFEVIPASSDQNRIGQDSYVLMASSQVEME
EWVKFLRRVAGTPSGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGVSEEGIFRLPGQDNLVKQ
LRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLST
LPRDNYNLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDH
EVLFPKSKDAPISPPAQKNDAKKAPVPRSSVGWDATEDPPLSRTDSFSNTASSPDATSPTGPLPSDQHQE
DSGKAPRENPGDWKMQSRKRTQTLPNRKCFLTSAFQGTTSSKLEIFKNEFWSPSSEAKAGEGHRRTMSQD
LRHLSNDQRTSTYDNVPTSPQSQGNPAGALSPPASDSKRDALVSTDSEMEAGSKNSGEDDLDSLQRTVQS
LQKEIETQKQVYEEQIKNLEKENYDVWAKVVRLNEELERERKKFAALEISLRNVERSREDVEKRNRVLEE
EVKEFVKSMEKPKTKTDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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