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Report for CCDS19766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19766.1 Public Mus musculus 5 Slc12a9 23 108 98 CCDS HistoryNCBI Gene:83704Re-query CCDS DB by CCDS ID:19766.1Re-query CCDS DB by GeneID:83704See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039991.13 ENSMUSP00000038106.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039991.13Link to Ensembl Protein Viewer:ENSMUSP00000038106.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039991Re-query CCDS DB by Protein ID:ENSMUSP00000038106
Original member Current member NCBI NM_001359611.1 NP_001346540.1 Accepted alive Link to Nucleotide Sequence:NM_001359611.1Link to Protein Sequence:NP_001346540.1Re-query CCDS DB by Nucleotide ID:NM_001359611Re-query CCDS DB by Protein ID:NP_001346540Link to BLAST:NP_001346540.1
Original member Current member NCBI NM_031406.3 NP_113583.2 Accepted alive Link to Nucleotide Sequence:NM_031406.3Link to Protein Sequence:NP_113583.2Re-query CCDS DB by Nucleotide ID:NM_031406Re-query CCDS DB by Protein ID:NP_113583Link to BLAST:NP_113583.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346540.1 914 Q99MR3 914 100% 0 0
NP_113583.2 914 Q99MR3 914 100% 0 0

Chromosomal Locations for CCDS 19766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137314951 137315837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137321394 137321540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137322396 137322570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137322716 137322908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137323047 137323171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137325323 137325405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137325517 137325674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137327371 137327482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137327597 137327704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137328437 137328745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137330943 137331074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137332126 137332260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137332456 137332636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2745 nt):
ATGGCCAGCGAGAGCTCCCCTCTTTTGGCCTACCGGCTTCTGGGGGAAGAGGGGGCTGCCTTCCCTCCCA
ATGGAGCTGGAGTATCTGGAGTGCCATCATCCCGCAAGCTCTCCACCTTCCTGGGTGTGGTGGTGCCCAC
GGTTCTGTCCATGTTTAGCATAGTCGTGTTTCTGAGGATTGGGTTCGTGGTGGGCCACGCTGGGCTGTTG
CAGGCCTTGGCGATGCTACTGGTTGCCTACATCATTCTGGCACTAACAGTCCTCTCAGTGTGTGCCATTG
CCACCAATGGAGCTGTGAGAGGGGGCGGAGCCTACTTCATGATCAGCAGGACTCTGGGGCCGGAGGTTGG
TGGCAGCATTGGCCTCATGTTCTACCTGGCTAACGTCTGTGGCTGTGCCGTATCCCTGCTGGGACTGGTG
GAGTCTATACTGGACGTCTTCGGGGCTGATGCCACAGGCTCCAGTGGGATCCAGGTTCTACCCCAGGGTT
ATGGCTGGAATCTGCTCTATGGCTCCCTTCTGCTGGGCCTCGTGGGTGGTGTGTGCACTTTGGGAGCTGG
GCTCTATGCCCGAGCCTCCTTTCTTACATTCCTGCTGGTTTCTGGCTCCCTGGCCTCCGTGCTGGTCAGT
TTTGTGGCAGTGGGACCCAGGAACATCCCGTTAGCTCCTCGACCGGGCACCAATGCTTCCTCCGTGCCAC
ACCGGCATGGCCACTTCACTGGGTTCAACGGAAGCACCCTAAGGGACAACTTAGGTGCTGGCTACGCCGA
GGACTACACCACAGGGGCCATGATGACTTTCGCCAGTGTTTTTGCTGTCCTCTTCAACGGCTGCACGGGC
ATCATGGCTGGGGCCAACATGTCAGGGGAGCTGAAGGACCCCAGCCGGGCAATTCCTCTGGGCACCATCA
TTGCAGTCGCCTATACCTTCTTCATCTACATCCTGCTGTTCTTCCTCTCCAGCTTCACTTGTGACAGAGC
CCTGCTTCAAGAAGACTATGGCTTCTTCCGTGACATCAGCTTGTGGCCCCCGCTCGTGTTGATCGGCATC
TATGCCACGGCCCTCTCAGCCTCCATGAGCTCTCTCATCGGTGCCTCCCGGATCCTGCATGCGCTGGCCC
AAGATGACCTTTTCGGGGTCATCTTGGCACCAGCCAAGGTGGTATCTGGAGGGGGCAACCCCTGGGGTGC
TGTCCTGTATTCCTGGGGCCTGGTGCAGCTGGTGCTGCTGGCTGGGAAGCTCAACACATTGGCTGCTGTG
GTCACCGTCTTCTACTTGGTGGCTTATGCTGCGGTGGACCTGTCTTGCCTGAGTCTGGAGTGGGCTTCGG
CCCCTAACTTCCGCCCCACCTTCAGCCTGTTCTCCTGGCACACCTGCCTGCTTGGGGTGGCCTCCTGCCT
GCTGATGATGTTTCTCATTAGTCCTGGGGCCGCCGGCGGGTCCCTTCTTCTCATGGGCCTGCTTTCCGCT
CTTCTCACCGCACGAGGAGGACCCAGCAGTTGGGGTTATGTCAGCCAAGCCTTGCTTTTCCACCAGGTTC
GGAAGTACTTGCTCCGCCTGGATGTCCGCAAGGAGCACGTAAAGTTCTGGCGGCCCCAGCTGCTGCTCCT
GGTGGGAAACCCACGGGGTGCCCTGCCTCTGCTTCGCCTGGCCAACCAGCTAAAGAAGGGGGGACTCTAT
GTGCTGGGCCATGTCACTCTGGGAGACCTTGACTCCTTACCATCAGATCCTGTGCAGCCGCAGTATGGTG
CATGGCTGAGCCTGGTGGACCTTGCCCAAGTGAAGGCCTTTGTGGATCTCACCCTATCACCCTCCGTGCG
TCAGGGGGCTCAGCATCTGCTCCGGATCTCTGGTCTTGGCGGCATGAAGCCCAACACATTGGTGCTGGGT
TTTTACGACGATGCCCCACCCCAGGACCATTTTCTAACAGACCCAGCCTTCTCTGAACCTGCAGAGGGCA
CCAGAGAGGGCGGGTCGCCAGCCCTGAGCACGCTGTTCCCTCCACCTCGGGCTCCTGGGAGCCCCAGGGC
TCTCAGTCCCCAAGACTACGTGGCCACGGTGGCAGATGCTCTCAAGATGAACAAGAATGTGGTTCTCGCA
CGAGCATGTGGGGCTTTGCCCCCGGAGCGGCTAAGCCGGGGGTCCAGTAGCAGCGCTCAGCTACATCATG
TGGACGTGTGGCCCTTAAACCTGCTGAGGCCCCGGGGTGGACCTGGCTACGTGGACGTCTGTGGCCTTTT
TCTGTTGCAGATGGCTACCATCTTAAGCATGGTGCCTGCCTGGCACAGTGCCCGGCTCCGGATCTTCCTG
TGCTTGGGGCCCAGGGAGGCTCCTGGGGCAGCAGAGGGAAGGCTTCGGGCCCTGTTGAGTCAACTCAGGA
TCCGGGCAGAGGTGCAAGAGGTGGTGTGGGGTGAAGGGGCAGAGACTGGCGAGCCTGAGGAGGAGGAAGG
GGACTTTGTGAATGGTGGTCGAGGAGACGAAGAGGCTGAGGCTCTAGCTTGCAGTGCCAATGCCCTGGTG
CGAGCACAGCAGGGGCGAGGCACCGTAGGAGGCCCTGGGGGACCCGAAGGAAGGGATGGGGAGGAGGGAC
CCACCACAGCCCTTACCTTCCTGTACCTGCCTCGACCGCCTGCTGATCCTGCTCGCTACCCCAGATACCT
GGCACTGCTGGAGACCCTGAGCCGTGATCTGGGTCCCACCCTTCTTATTCACGGGGTCACTCCGGTAACC
TGCACTGATCTCTGA

Translation (914 aa):
MASESSPLLAYRLLGEEGAAFPPNGAGVSGVPSSRKLSTFLGVVVPTVLSMFSIVVFLRIGFVVGHAGLL
QALAMLLVAYIILALTVLSVCAIATNGAVRGGGAYFMISRTLGPEVGGSIGLMFYLANVCGCAVSLLGLV
ESILDVFGADATGSSGIQVLPQGYGWNLLYGSLLLGLVGGVCTLGAGLYARASFLTFLLVSGSLASVLVS
FVAVGPRNIPLAPRPGTNASSVPHRHGHFTGFNGSTLRDNLGAGYAEDYTTGAMMTFASVFAVLFNGCTG
IMAGANMSGELKDPSRAIPLGTIIAVAYTFFIYILLFFLSSFTCDRALLQEDYGFFRDISLWPPLVLIGI
YATALSASMSSLIGASRILHALAQDDLFGVILAPAKVVSGGGNPWGAVLYSWGLVQLVLLAGKLNTLAAV
VTVFYLVAYAAVDLSCLSLEWASAPNFRPTFSLFSWHTCLLGVASCLLMMFLISPGAAGGSLLLMGLLSA
LLTARGGPSSWGYVSQALLFHQVRKYLLRLDVRKEHVKFWRPQLLLLVGNPRGALPLLRLANQLKKGGLY
VLGHVTLGDLDSLPSDPVQPQYGAWLSLVDLAQVKAFVDLTLSPSVRQGAQHLLRISGLGGMKPNTLVLG
FYDDAPPQDHFLTDPAFSEPAEGTREGGSPALSTLFPPPRAPGSPRALSPQDYVATVADALKMNKNVVLA
RACGALPPERLSRGSSSSAQLHHVDVWPLNLLRPRGGPGYVDVCGLFLLQMATILSMVPAWHSARLRIFL
CLGPREAPGAAEGRLRALLSQLRIRAEVQEVVWGEGAETGEPEEEEGDFVNGGRGDEEAEALACSANALV
RAQQGRGTVGGPGGPEGRDGEEGPTTALTFLYLPRPPADPARYPRYLALLETLSRDLGPTLLIHGVTPVT
CTDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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