NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19575.1 Public Mus musculus 5 Oasl1 23 108 98 CCDS HistoryNCBI Gene:231655Re-query CCDS DB by CCDS ID:19575.1Re-query CCDS DB by GeneID:231655See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031540.10 ENSMUSP00000031540.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031540.10Link to Ensembl Protein Viewer:ENSMUSP00000031540.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031540Re-query CCDS DB by Protein ID:ENSMUSP00000031540
Original member Current member EBI ENSMUST00000112143.3 ENSMUSP00000107771.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112143.3Link to Ensembl Protein Viewer:ENSMUSP00000107771.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112143Re-query CCDS DB by Protein ID:ENSMUSP00000107771
Original member Current member NCBI NM_001359945.1 NP_001346874.1 Accepted alive Link to Nucleotide Sequence:NM_001359945.1Link to Protein Sequence:NP_001346874.1Re-query CCDS DB by Nucleotide ID:NM_001359945Re-query CCDS DB by Protein ID:NP_001346874Link to BLAST:NP_001346874.1
Original member Current member NCBI NM_145209.3 NP_660210.1 Accepted alive Link to Nucleotide Sequence:NM_145209.3Link to Protein Sequence:NP_660210.1Re-query CCDS DB by Nucleotide ID:NM_145209Re-query CCDS DB by Protein ID:NP_660210Link to BLAST:NP_660210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346874.1 511 Q8VI94 511 100% 0 0
NP_660210.1 511 Q8VI94 511 100% 0 0

Chromosomal Locations for CCDS 19575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114923412 114923609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114928023 114928305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114929840 114930003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114932723 114932964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114935921 114936068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114936918 114937418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGCAGTCGCCCAGGAGCTGTACGGCTTCCCGGCCTCCAAGCTGGACTCCTTTGTGGCTCAGTGGCTGC
AGCCAACCAGAGAGTGGAAAGAAGAGGTCCTGGAGACCGTGCAGACAGTGGAGCAGTTCCTGAGGCAGGA
GAATTTCCGTGAAGATCGTGGCCCGGCTCGGGATGTGCGCGTGCTCAAGGTACTCAAGGTAGGCTGCTTT
GGGAATGGCACCGTGCTCAGGAGCACTACAGACGTGGAGCTGGTCGTGTTCCTGAGCTGTTTCCACAGCT
TCCAGGAAGAAGCCAAGCACCATCAGGCTGTCCTGAGACTGATACAGAAAAGGATGTACTACTGCCAGGA
GCTGATGGACCTTGGGCTCAGTAACCTGAGTGTGACTAACAGAGTACCCAGTAGTCTCATCTTCACGATC
CAGACCAGGGAGACCTGGGAGACCATCACTGTCACCGTTGTGCCCGCCTACAGAGCCCTGGGCCCTTCCT
GTCCCAGCTCCGAGGTCTACGCAAATCTGATCAAGGCTAATGGGTACCCAGGAAATTTCTCTCCATCCTT
CAGCGAGCTGCAGCGAAACTTCGTGAAGCATCGGCCGACGAAGCTGAAGAGCCTCCTTCGGTTGGTCAAA
CACTGGTACCAGCAGTATGTGAGAGACAAGTGCCCCCGGGCCAACCTGCCCCCTCTCTATGCCCTGGAGC
TGCTCACTGTCTATGCCTGGGAAGCGGGCACCCGGGAGGATGCCAACTTCAGGCTGGATGAAGGCCTCGC
CACGGTGATGGAGCTGCTCCAGGATCATGAGCTCCTCTGTATCTACTGGACCAAGCACTACACGCTGCAG
CACCCGGTCATCGAGGCCTGTGTCAGGAGACAGCTCAGGGGACAAAGGCCTATCATCCTGGACCCAGCAG
ACCCCACCAACAATGTGGCAGAAGGCTACAGATGGGACATAGTGGCTCAGCGGGCCAACCAGTGTCTGAA
ACAGGACTGTTGCTATGACAACAGGGACAGCCCCGTCCCCAGCTGGAGGGTGAAGAGAGCACCCGATATC
CAGGTGACCGTGCAGGAGTGGGGGCACTCGGATTTAACCTTCTGGGTGAACCCTTATGAACCCATAAAGA
AACTGAAAGAGAAAATCCAACTGAGCCAGGGCTACTTGGGCCTGCAGCGTCTGTCCTTTCAGGAGCCCGG
CGGAGAACGTCAGCTCATCAGAAGCCATTGCACGCTCGCCTACTACGGAATCTTCTGCGACACCCACATC
TGCCTGCTGGACACCATCTCCCCTGAGATCCAGGTCTTTGTGAAAAACCCGGATGGCAGGAGCCACGCCT
ATGCGATCCACCCGCTTGATTACGTCCTGAACCTGAAGCAGCAGATAGAAGACAGGCAGGGCCTTCGATG
CCAGGAGCAGCGCCTGGAGTTCCAGGGCCACATCCTGGAGGACTGGTTTGACTTTAAATCCTATGGCATC
CAAGACAGTGTCACAGTCATCCTGTCCAAGACGACGGAGGGGGCAGCTCCATTTGTGCCCAGCTAG

Translation (511 aa):
MAVAQELYGFPASKLDSFVAQWLQPTREWKEEVLETVQTVEQFLRQENFREDRGPARDVRVLKVLKVGCF
GNGTVLRSTTDVELVVFLSCFHSFQEEAKHHQAVLRLIQKRMYYCQELMDLGLSNLSVTNRVPSSLIFTI
QTRETWETITVTVVPAYRALGPSCPSSEVYANLIKANGYPGNFSPSFSELQRNFVKHRPTKLKSLLRLVK
HWYQQYVRDKCPRANLPPLYALELLTVYAWEAGTREDANFRLDEGLATVMELLQDHELLCIYWTKHYTLQ
HPVIEACVRRQLRGQRPIILDPADPTNNVAEGYRWDIVAQRANQCLKQDCCYDNRDSPVPSWRVKRAPDI
QVTVQEWGHSDLTFWVNPYEPIKKLKEKIQLSQGYLGLQRLSFQEPGGERQLIRSHCTLAYYGIFCDTHI
CLLDTISPEIQVFVKNPDGRSHAYAIHPLDYVLNLKQQIEDRQGLRCQEQRLEFQGHILEDWFDFKSYGI
QDSVTVILSKTTEGAAPFVPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH