NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19308.1 Public Mus musculus 5 Ugdh 23 108 98 CCDS HistoryNCBI Gene:22235Re-query CCDS DB by CCDS ID:19308.1Re-query CCDS DB by GeneID:22235See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031103.13 ENSMUSP00000031103.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031103.13Link to Ensembl Protein Viewer:ENSMUSP00000031103.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031103Re-query CCDS DB by Protein ID:ENSMUSP00000031103
Original member Current member NCBI NM_009466.2 NP_033492.1 Accepted alive Link to Nucleotide Sequence:NM_009466.2Link to Protein Sequence:NP_033492.1Re-query CCDS DB by Nucleotide ID:NM_009466Re-query CCDS DB by Protein ID:NP_033492Link to BLAST:NP_033492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033492.1 493 O70475 493 100% 0 0

Chromosomal Locations for CCDS 19308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65413956 65414063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65416825 65416935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65417021 65417112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65417511 65417644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65418478 65418608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65420249 65420343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65422635 65422782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65423161 65423358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65423450 65423650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65424042 65424143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65427416 65427577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGTTGAGATTAAGAAGATCTGTTGCATTGGTGCGGGCTATGTCGGCGGACCCACGTGCAGTGTCATTG
CTCACATGTGCCCTGAAATCAGGGTTACGGTTGTGGATGTCAACGAGGCAAGGATCAATGCATGGAATTC
TCCAACCCTTCCTATTTATGAGCCTGGATTAAAAGAAGTAGTCGAATCCTGTCGAGGAAAAAACCTATTT
TTTTCTACCAATATTGATGATGCCATCAGAGAAGCCGATCTAGTATTTATTTCTGTGAACACACCAACAA
AAACATATGGGATGGGAAAAGGCCGGGCAGCAGACCTGAAGTATATCGAAGCTTGTGCTCGCCGCATTGT
GCAGAACTCAAATGGGTACAAAATTGTCACGGAGAAAAGCACAGTCCCTGTGCGGGCAGCAGAAAGCATC
CGCCGCATATTTGATGCCAACACAAAGCCCAACTTGAATTTACAGGTGCTGTCCAATCCTGAGTTCTTGG
CAGAGGGAACAGCCATCAAGGACCTAAAGAACCCGGACAGAGTCCTGATTGGAGGGGATGAAACTCCAGA
GGGCCAGAAAGCCGTTCGGGCTCTGTGTGCTGTGTATGAGCACTGGGTTCCTAAGGAAAAGATCCTCACC
ACCAACACCTGGTCCTCGGAGCTTTCCAAGCTGGCAGCCAATGCATTTCTTGCGCAGAGGATCAGCAGCA
TCAACTCCATCAGCGCTCTGTGTGAAGCAACAGGCGCCGATGTGGAAGAGGTGGCAACGGCCATCGGGAT
GGACCAAAGAATTGGGAATAAGTTTCTAAAGGCCAGCGTTGGTTTTGGTGGAAGCTGCTTCCAAAAAGAT
GTTCTGAATTTGGTTTATCTCTGTGAGGCTCTGAATCTGCCCGAAGTAGCTCGTTACTGGCAGCAGGTCA
TAGACATGAATGACTACCAGAGGAGGAGGTTTGCATCACGGATCATAGATAGCCTGTTTAATACAGTGAC
CGATAAGAAGATAGCTATCTTGGGGTTTGCATTCAAAAAGGATACTGGTGATACCAGAGAATCCTCCAGT
ATCTACATTAGCAAGTACCTGATGGACGAGGGTGCACACCTCCACATATATGATCCAAAAGTACCCAGGG
AACAAATAGTGGTGGACCTTTCTCATCCGGGTGTCTCAGCGGATGACCAAGTGTCCAGACTGGTGACCAT
TTCCAAGGACCCATACGAAGCGTGTGATGGCGCCCATGCCCTCGTTATCTGCACTGAGTGGGACATGTTT
AAGGAACTGGATTACGAACGGATTCATAAAAAAATGCTGAAGCCAGCCTTTATCTTTGATGGTCGGCGTG
TCCTGGATGGGCTCCACAGTGAGCTACAGACCATTGGCTTCCAGATTGAAACAATTGGCAAAAAGGTGTC
TTCCAAGAGAATTCCGTACACTCCTGGTGAGATTCCGAAGTTTAGTCTTCAGGACCCACCTAACAAGAAA
CCCAAAGTCTAG

Translation (493 aa):
MVEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLF
FSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESI
RRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQKAVRALCAVYEHWVPKEKILT
TNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKD
VLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSS
IYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVSRLVTISKDPYEACDGAHALVICTEWDMF
KELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGKKVSSKRIPYTPGEIPKFSLQDPPNKK
PKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH