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Report for CCDS19278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19278.1 Public Mus musculus 5 Lcorl 23 108 98 CCDS HistoryNCBI Gene:209707Re-query CCDS DB by CCDS ID:19278.1Re-query CCDS DB by GeneID:209707See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087164.9 ENSMUSP00000084408.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087164.9Link to Ensembl Protein Viewer:ENSMUSP00000084408.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087164Re-query CCDS DB by Protein ID:ENSMUSP00000084408
Original member NCBI NM_172153.3 NP_742165.1 Updated not alive Link to Nucleotide Sequence:NM_172153.3Link to Protein Sequence:NP_742165.1Re-query CCDS DB by Nucleotide ID:NM_172153Re-query CCDS DB by Protein ID:NP_742165
Current member NCBI NM_172153.4 NP_742165.1 Accepted alive Link to Nucleotide Sequence:NM_172153.4Link to Protein Sequence:NP_742165.1Re-query CCDS DB by Nucleotide ID:NM_172153Re-query CCDS DB by Protein ID:NP_742165Link to BLAST:NP_742165.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742165.1 517 Q3U285-2 517 100% 0 0

Chromosomal Locations for CCDS 19278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 45733456 45734485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45735731 45735824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45747056 45747307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45775392 45775521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 45776420 45776467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGATGAAAAATGTTCATTTTGTAACCTACAGAGAGAAGCAGTCAGTGATTGTATACCATCTCTTGATT
CTTCACAGTCAACGCCAACAGAGGAGCTATCATCTCAGGGCCAGTCCCACACTGATAAGATTGAATGCCA
AGCAGAAAGTTACCTAAATGCACTCTTTCGAAAGAAAGATCTTCCTCAGAACTGTGATCCTAACATTCCC
TTAGTTGCTCAGGAATTAATGAAAAAAATGATACGTCAGTTTGCAATTGAGTACATCTCAAAAAGCGGTA
AAATTCAAGAAAATAGAAATGGTTCAATTGGAGCAAGTCTCGTGTGTAAAAGTATCCAAATGAACCAAGC
AGACAACTGCCTTCAGGATGAGCAAGAAGGCCCCTTAGACCTCACTGTGACTCGAACGCAAGAGCAAACT
GCTCAGCAAGGGGATGGAGTGTTAGATCTCTCTACAAAGAAAACCAGCATAAAGTCTGAAGAGTCATCCA
TAAGTGATCCTTCTTCTGAAAATGCAGTGGCTGGGAGACTACACAGAAACAGAGAGGACTATGTGGAAAG
AAGTGCTGAGTTTGCAGATGGTTTGCTCTCAAAAGCTTTGAAAGACATTCAGTCTGGAGCACTGGACATA
AATAAAGCAGGCATACTTTATGGCATACCTCAAAAAACTTTACTTCTCCACTTAGAAGCCTTACCAGCAG
GGAAGCCTGCATCTTTTAAAAACAAAACTCGAGATTTCAATGATAGTTACTCATATAACGAAAGTAAAGA
AACTTGTGCTGTGCTGCAAAAAGTAGCCTTGTGGGCAAGAGCTCAAACAGAGCGCACAGAAAAAAGTAAA
CTCAACCTACTTGAAACCTCAGAATTCAAATTCCCAACAGCTTCCAGTTACCTCCATCAGTTAACTCTAC
AGAAAATGGTTACTCAGTTTAAAGAAAAAAATGAAAGCCTTCAATATGAAACTTCAAATCCTCCTGTACA
GTTAAAAATTCCTCAGCTACGAGTAAATTCGGTTTCAAAATCACAAGCTGATGGTTCTGGTCTGCTGGAT
GTCATGTATCAAGTTTCCAAAACCTCTTCAGTCCTTGAAGGATCAGCTCTCCAAAAACTGAAAAATATAC
TCCCTAAACAGAACAAACTAGACTGTTCTGGGCCTGTAACTCACTCAAGTGTTGACTCTTACTTTCTACA
TGGGGACCTCTCTCCTTTGTGTCTTAATTCTAAAAATGGAACAGTTGATGGAACCTCTGAGAACACTGAA
GATGGACTGGACCGGAAAGATAATAAGCAGCCCAGGAAAAAACGTGGCCGCTATCGACAGTATGATCATG
AAATAATGGAAGAGGCCATTGCAATGGTAATGAGTGGGAAAATGAGTGTTTCCAAAGCACAAGGAATCTA
TGGGGTACCTCACAGCACTTTAGAATACAAGGTAAAGGAAAGATCTGGAACACTGAAGACTCCTCCGAAG
AAGAAACTACGATTACCAGACACTGGGTTATATATGACAGATTCAGGGACTGGCAGCTGCAGAAACAGCA
GCAAGCCTGTGTAG

Translation (517 aa):
MDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSHTDKIECQAESYLNALFRKKDLPQNCDPNIP
LVAQELMKKMIRQFAIEYISKSGKIQENRNGSIGASLVCKSIQMNQADNCLQDEQEGPLDLTVTRTQEQT
AQQGDGVLDLSTKKTSIKSEESSISDPSSENAVAGRLHRNREDYVERSAEFADGLLSKALKDIQSGALDI
NKAGILYGIPQKTLLLHLEALPAGKPASFKNKTRDFNDSYSYNESKETCAVLQKVALWARAQTERTEKSK
LNLLETSEFKFPTASSYLHQLTLQKMVTQFKEKNESLQYETSNPPVQLKIPQLRVNSVSKSQADGSGLLD
VMYQVSKTSSVLEGSALQKLKNILPKQNKLDCSGPVTHSSVDSYFLHGDLSPLCLNSKNGTVDGTSENTE
DGLDRKDNKQPRKKRGRYRQYDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKTPPK
KKLRLPDTGLYMTDSGTGSCRNSSKPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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