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Report for CCDS18043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18043.1 Public Mus musculus 4 Rigi 23 108 98 CCDS HistoryNCBI Gene:230073Re-query CCDS DB by CCDS ID:18043.1Re-query CCDS DB by GeneID:230073See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037907.12 ENSMUSP00000042433.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037907.12Link to Ensembl Protein Viewer:ENSMUSP00000042433.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037907Re-query CCDS DB by Protein ID:ENSMUSP00000042433
Original member Current member NCBI NM_172689.3 NP_766277.3 Accepted alive Link to Nucleotide Sequence:NM_172689.3Link to Protein Sequence:NP_766277.3Re-query CCDS DB by Nucleotide ID:NM_172689Re-query CCDS DB by Protein ID:NP_766277Link to BLAST:NP_766277.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766277.3 926 Q6Q899-1 926 100% 0 0

Chromosomal Locations for CCDS 18043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40205810 40206106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40208451 40208594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40208771 40208922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40209879 40210049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40211550 40211640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40213731 40213879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40216355 40216490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40217330 40217487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40220399 40220503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40222035 40222197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40223798 40224056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40225040 40225193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40225598 40225705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40226597 40226719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40227966 40228113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40229495 40229676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40235248 40235382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40239591 40239696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGACAGCGGAGCAGCGGCAGAATCTGCAAGCATTCAGAGACTATATCAAGAAGATTCTGGACCCCACCT
ACATCCTCAGCTACATGAGTTCCTGGCTCGAGGATGAGGAGGTGCAGTACATTCAGGCTGAGAAGAACAA
CAAGGGCCCAATGGAAGCTGCCTCACTCTTCCTCCAGTACCTGTTGAAGCTGCAGTCAGAGGGCTGGTTC
CAGGCCTTTTTGGATGCCCTGTACCATGCAGGTTACTGTGGACTTTGTGAAGCCATCGAAAGTTGGGACT
TTCAAAAAATTGAAAAGTTAGAGGAACACAGATTACTTTTAAGACGTTTAGAACCAGAATTTAAGGCCAC
AGTTGATCCAAATGATATCCTTTCTGAACTATCCGAATGTTTGATTAATCAGGAATGTGAAGAAATCAGA
CAGATCCGAGACACTAAAGGGAGAATGGCAGGTGCGGAGAAGATGGCCGAATGTCTTATCAGATCCGACA
AGGAAAACTGGCCAAAGGTCTTGCAACTTGCTTTGGAGAAAGACAACAGCAAGTTTAGTGAATTGTGGAT
TGTTGATAAAGGTTTCAAAAGGGCTGAAAGCAAGGCTGATGAGGATGATGGAGCGGAGGCGTCCAGCATC
CAGATTTTCATTCAGGAAGAGCCAGAGTGTCAGAATCTCAGTCAGAATCCCGGGCCTCCTTCAGAAGCGT
CTTCTAATAATTTACACAGCCCATTGAAACCAAGAAATTACCAACTGGAGCTTGCCCTGCCTGCCAAGAA
AGGGAAAAATACAATAATATGTGCCCCTACTGGTTGTGGAAAAACCTTTGTGTCGCTTCTTATATGTGAA
CACCATCTTAAAAAATTCCCATGTGGACAAAAAGGGAAAGTGGTCTTCTTCGCTAACCAAATTCCTGTCT
ATGAGCAGCAGGCAACTGTGTTCTCACGATATTTTGAAAGACTTGGGTACAACATTGCGAGCATTTCTGG
GGCAACATCTGATAGCGTCTCAGTGCAGCACATCATTGAAGACAATGATATCATCATCCTGACACCCCAG
ATTCTTGTGAACAATCTCAACAACGGAGCCATCCCCTCGTTGTCTGTCTTCACTCTGATGATATTTGATG
AGTGTCATAACACTAGCAAAAACCACCCATACAATCAGATCATGTTCAGATACCTAGACCACAAACTTGG
AGAGTCACGGGACCCACTGCCTCAGGTCGTTGGGCTGACTGCCTCCGTCGGCGTTGGAGATGCTAAGACC
GCGGAGGAAGCCATGCAACATATCTGTAAACTCTGTGCCGCCCTGGATGCCTCCGTGATTGCCACAGTCA
GAGACAACGTTGCAGAACTGGAACAGGTCGTTTATAAGCCCCAGAAAATTTCCAGGAAAGTGGCATCCCG
GACTTCGAACACGTTTAAATGCATCATCTCTCAGCTGATGAAGGAGACAGAGAAGCTAGCCAAGGATGTC
TCCGAGGAACTTGGAAAGCTTTTTCAAATTCAAAACAGAGAATTCGGCACCCAGAAATATGAACAGTGGA
TTGTCGGCGTCCACAAAGCGTGCTCAGTGTTTCAGATGGCAGACAAAGAGGAGGAGAGCCGGGTCTGCAA
AGCGCTCTTCCTGTACACATCACATTTGCGGAAATACAACGATGCACTCATCATCAGTGAGGATGCACAG
ATGACAGACGCTCTAAATTACCTCAAAGCCTTCTTCCACGATGTCCGAGAAGCAGCATTCGATGAGACCG
AGCGAGAGCTTACTCGGAGGTTTGAAGAAAAACTAGAGGAATTAGAAAAAGTTTCCAGGGATCCCAGCAA
TGAGAATCCTAAACTAAGAGACCTCTACTTGGTCTTACAAGAAGAGTACCACTTAAAGCCAGAGACCAAG
ACCATTCTCTTCGTGAAGACCAGAGCACTCGTGGATGCTCTGAAGAAATGGATTGAAGAAAATCCTGCAC
TAAGCTTTCTAAAGCCTGGCATACTGACTGGGCGTGGCAGAACAAACCGGGCAACAGGAATGACGCTCCC
GGCACAGAAGTGTGTGCTGGAGGCATTCAGAGCCAGCGGAGATAACAATATTCTGATTGCTACCTCGGTC
GCTGATGAAGGCATTGACATTGCTGAGTGCAATCTCGTCATTCTCTATGAGTACGTGGGCAACGTCATCA
AGATGATCCAAACCAGAGGCCGAGGAAGAGCACGAGATAGCAAGTGCTTCCTCCTGACCAGCAGCGCTGA
CGTGATTGAAAAAGAAAAGGCGAACATGATCAAGGAAAAAATAATGAATGAATCCATCTTAAGACTGCAG
ACATGGGATGAAATGAAATTTGGAAAGACGGTTCACCGCATACAGGTGAATGAAAAACTCCTCAGAGACA
GTCAGCACAAACCACAACCTGTTCCTGACAAAGAAAACAAGAAACTGCTGTGTGGAAAGTGCAAGAATTT
TGCGTGCTACACAGCTGACATTCGAGTGGTTGAGACGTCCCACTACACTGTCCTTGGAGACGCTTTTAAG
GAGCGCTTTGTGTGTAAGCCACACCCTAAACCAAAGATCTATGACAATTTTGAGAAGAAAGCAAAGATAT
TCTGCGCCAAACAGAACTGTAGCCACGACTGGGGAATTTTTGTGAGATACAAGACGTTCGAGATTCCAGT
CATAAAAATTGAAAGTTTCGTCGTGGAAGATATTGTGAGCGGAGTTCAGAACCGGCACTCAAAGTGGAAG
GACTTTCATTTTGAAAGGATACAGTTCGATCCTGCAGAAATGTCCGTATGA

Translation (926 aa):
MTAEQRQNLQAFRDYIKKILDPTYILSYMSSWLEDEEVQYIQAEKNNKGPMEAASLFLQYLLKLQSEGWF
QAFLDALYHAGYCGLCEAIESWDFQKIEKLEEHRLLLRRLEPEFKATVDPNDILSELSECLINQECEEIR
QIRDTKGRMAGAEKMAECLIRSDKENWPKVLQLALEKDNSKFSELWIVDKGFKRAESKADEDDGAEASSI
QIFIQEEPECQNLSQNPGPPSEASSNNLHSPLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICE
HHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQ
ILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKT
AEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDV
SEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ
MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETK
TILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSV
ADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKANMIKEKIMNESILRLQ
TWDEMKFGKTVHRIQVNEKLLRDSQHKPQPVPDKENKKLLCGKCKNFACYTADIRVVETSHYTVLGDAFK
ERFVCKPHPKPKIYDNFEKKAKIFCAKQNCSHDWGIFVRYKTFEIPVIKIESFVVEDIVSGVQNRHSKWK
DFHFERIQFDPAEMSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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