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Report for CCDS17946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17946.1 Public Mus musculus 4 Penk 23 108 98 CCDS HistoryNCBI Gene:18619Re-query CCDS DB by CCDS ID:17946.1Re-query CCDS DB by GeneID:18619See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070375.7 ENSMUSP00000066822.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070375.7Link to Ensembl Protein Viewer:ENSMUSP00000066822.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070375Re-query CCDS DB by Protein ID:ENSMUSP00000066822
Original member Current member NCBI NM_001002927.3 NP_001002927.1 Accepted alive Link to Nucleotide Sequence:NM_001002927.3Link to Protein Sequence:NP_001002927.1Re-query CCDS DB by Nucleotide ID:NM_001002927Re-query CCDS DB by Protein ID:NP_001002927Link to BLAST:NP_001002927.1
Original member Current member NCBI NM_001348209.1 NP_001335138.1 Accepted alive Link to Nucleotide Sequence:NM_001348209.1Link to Protein Sequence:NP_001335138.1Re-query CCDS DB by Nucleotide ID:NM_001348209Re-query CCDS DB by Protein ID:NP_001335138Link to BLAST:NP_001335138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002927.1 268 P22005 268 100% 0 0
NP_001335138.1 268 P22005 268 100% 0 0

Chromosomal Locations for CCDS 17946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 4133839 4134507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4138006 4138143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGCGCGGTTCCTGAGGCTTTGCACCTGGCTGCTGGCGCTTGGGTCCTGCCTCCTGGCTACAGTGCAGG
CGGAATGCAGCCAGGACTGCGCTAAATGCAGCTACCGCCTGGTTCGCCCAGGCGACATCAATTTCCTGGC
GTGCACACTGGAATGTGAAGGACAGCTGCCTTCTTTCAAAATCTGGGAGACCTGCAAGGATCTCCTGCAG
GTGTCCAGGCCCGAGTTCCCTTGGGATAACATCGACATGTACAAAGACAGCAGCAAACAGGATGAGAGCC
ACTTGCTAGCCAAGAAGTACGGAGGCTTCATGAAACGGTACGGAGGCTTCATGAAGAAGATGGACGAGCT
ATATCCCATGGAGCCAGAAGAAGAAGCGAACGGAGGAGAGATCCTTGCCAAGAGGTATGGCGGCTTCATG
AAGAAGGATGCAGATGAGGGAGACACCTTGGCCAACTCCTCCGATCTGCTGAAAGAGCTACTGGGAACGG
GAGACAACCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATGACGAAGACATGAGCAAGAGGTA
TGGGGGCTTCATGAGAAGCCTCAAAAGAAGCCCCCAACTGGAAGATGAAGCAAAAGAGCTGCAGAAGCGC
TACGGGGGCTTCATGAGAAGGGTGGGACGCCCCGAGTGGTGGATGGACTACCAGAAGAGGTATGGGGGCT
TCCTGAAGCGCTTTGCTGAGTCTCTGCCCTCCGATGAAGAAGGCGAAAATTACTCGAAAGAAGTTCCTGA
GATAGAGAAAAGATACGGGGGCTTTATGCGGTTCTGA

Translation (268 aa):
MARFLRLCTWLLALGSCLLATVQAECSQDCAKCSYRLVRPGDINFLACTLECEGQLPSFKIWETCKDLLQ
VSRPEFPWDNIDMYKDSSKQDESHLLAKKYGGFMKRYGGFMKKMDELYPMEPEEEANGGEILAKRYGGFM
KKDADEGDTLANSSDLLKELLGTGDNRAKDSHQQESTNNDEDMSKRYGGFMRSLKRSPQLEDEAKELQKR
YGGFMRRVGRPEWWMDYQKRYGGFLKRFAESLPSDEEGENYSKEVPEIEKRYGGFMRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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