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Report for CCDS17244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17244.1 Public Mus musculus 3 Snx16 23 108 98 CCDS HistoryNCBI Gene:74718Re-query CCDS DB by CCDS ID:17244.1Re-query CCDS DB by GeneID:74718See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029047.11 ENSMUSP00000029047.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029047.11Link to Ensembl Protein Viewer:ENSMUSP00000029047.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029047Re-query CCDS DB by Protein ID:ENSMUSP00000029047
Original member Current member NCBI NM_029068.4 NP_083344.3 Accepted alive Link to Nucleotide Sequence:NM_029068.4Link to Protein Sequence:NP_083344.3Re-query CCDS DB by Nucleotide ID:NM_029068Re-query CCDS DB by Protein ID:NP_083344Link to BLAST:NP_083344.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083344.3 344 Q8C080 344 100% 0 0

Chromosomal Locations for CCDS 17244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10419127 10419223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10420197 10420316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10420740 10420876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10426163 10426232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10434358 10434506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10435446 10435532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10437811 10438185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGCAACCCCGTATGTCCCAGTTCCAATGCCAATAGGAAACTCCGCTTCCAGCTTTACAAACAACAGAA
ATCAAAGGAGTTCTTCTTTTGGCAGTGTTTCCACAAGCTCAACCTCTTCCAAAGGCCAGTTAGAGGACTC
AGCTGTGGGCAGTCTTAAGCAGACGAATGTCCAGGATCAGATGGACAGTGCATCATCAATGTGTGGTAGT
CCTCTCATTAGGACTAAATTTACAGGGACAGATTCATCCATTGAGTATTCTGCTAGACCAAGAGAGGCTG
AAGAGCAGCATCCTGAGGCAGTGAACTGGGAAGACAGACCTTCAACACCTACAATTCTAGGTTACGAGGT
TATGGAAGAGCGGGCCAAATTCACTGTATATAAAATCCTAGTAAAGAAAAGCCCAGAAGAAAGCTGGGTA
GTTTTCCGAAGATACACTGACTTCTCCAGGCTTAATGACAAATTAAAAGAGATGTTTCCAGGCTTTCGAT
TAGCACTTCCTCCAAAACGCTGGTTTAAAGATAATTATAATGCGGAATTTCTAGAAGATAGACAATTAGG
ACTACAAGCATTTCTTCAGAACCTAGTAGCTCACAAGGACATTGCTAACTGCCTTGCAGTGAGAGAATTT
CTTTGTCTGGATGATCCACCAGGTCCATTTGATAGCCTAGAAGAAAGCAGGGCTTTCTGTGAGACTTTAG
AAGAGACTAACTACCATTTACAAAGAGAACTGCTAGAGAAGCAAAAAGAGGTGGAATCCCTGAAGAAACT
GCTCGGGGAAAAGCAACTTCACATAGATGCTTTAGAGACCAGAATCAGAACATTGTCCTTAGAACCTGGA
GCATCACTGTATGTGTCAAGAGCAGAAGGTGGACAGATCCTAAGGGTGGAGCCCTCTGTACTTCAAGTCA
ATCGGGATGTCTTGGATGAAGAATCTAGAGCTGATCATAAGCCACACTTCAACTCTAGAGAAGCCGGAAG
TGTGATAGCAGGCATAGAAGTCGCACAGTTGGCATATAATGCTGAAGATGACTAA

Translation (344 aa):
MATPYVPVPMPIGNSASSFTNNRNQRSSSFGSVSTSSTSSKGQLEDSAVGSLKQTNVQDQMDSASSMCGS
PLIRTKFTGTDSSIEYSARPREAEEQHPEAVNWEDRPSTPTILGYEVMEERAKFTVYKILVKKSPEESWV
VFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFKDNYNAEFLEDRQLGLQAFLQNLVAHKDIANCLAVREF
LCLDDPPGPFDSLEESRAFCETLEETNYHLQRELLEKQKEVESLKKLLGEKQLHIDALETRIRTLSLEPG
ASLYVSRAEGGQILRVEPSVLQVNRDVLDEESRADHKPHFNSREAGSVIAGIEVAQLAYNAEDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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