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Report for CCDS1652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1652.1 Public Homo sapiens 2 TRAPPC12 24 110 108 CCDS HistoryNCBI Gene:51112Re-query CCDS DB by CCDS ID:1652.1Re-query CCDS DB by GeneID:51112See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1652.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324266.10 ENSP00000324318.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324266.10Link to Ensembl Protein Viewer:ENSP00000324318.5Re-query CCDS DB by Nucleotide ID:ENST00000324266Re-query CCDS DB by Protein ID:ENSP00000324318
Original member Current member EBI ENST00000382110.6 ENSP00000371544.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382110.6Link to Ensembl Protein Viewer:ENSP00000371544.2Re-query CCDS DB by Nucleotide ID:ENST00000382110Re-query CCDS DB by Protein ID:ENSP00000371544
Original member Current member NCBI NM_001321102.2 NP_001308031.1 Accepted alive Link to Nucleotide Sequence:NM_001321102.2Link to Protein Sequence:NP_001308031.1Re-query CCDS DB by Nucleotide ID:NM_001321102Re-query CCDS DB by Protein ID:NP_001308031Link to BLAST:NP_001308031.1
Original member Current member NCBI NM_016030.6 NP_057114.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016030.6Link to Protein Sequence:NP_057114.5Re-query CCDS DB by Nucleotide ID:NM_016030Re-query CCDS DB by Protein ID:NP_057114Link to BLAST:NP_057114.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308031.1 735 Q8WVT3 735 100% 0 0
NP_057114.5 735 Q8WVT3 735 100% 0 0

Chromosomal Locations for CCDS 1652.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3387624 3388670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3401777 3401893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3421881 3421994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3424525 3424663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3443779 3443891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3457621 3457693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3460263 3460336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3465597 3465695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3477695 3477795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3478846 3478933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3479219 3479461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGGAGGACGCTGGCGGCGGCGAGGAGACCCCGGCCCCGGAGGCCCCGCACCCCCCTCAGCTCGCGCCTC
CGGAGGAGCAGGGGTTGCTCTTCCAGGAGGAAACCATCGATCTTGGCGGAGATGAGTTTGGATCCGAAGA
GAACGAGACCGCATCGGAAGGCTCGAGTCCTCTCGCGGACAAGCTGAACGAACACATGATGGAGAGCGTC
CTCATCTCTGACTCCCCCAACAGCGAGGGCGACGCGGGCGACCTGGGCCGAGTGCGGGACGAAGCTGAGC
CCGGAGGGGAAGGCGACCCAGGCCCGGAGCCCGCGGGCACCCCGAGTCCCAGCGGCGAGGCCGACGGCGA
CTGTGCCCCCGAGGACGCGGCACCCAGTAGCGGAGGGGCCCCGAGGCAGGACGCGGCCCGCGAGGTCCCA
GGCAGCGAAGCCGCGCGCCCGGAGCAGGAGCCTCCCGTTGCGGAGCCGGTCCCGGTGTGCACCATCTTCA
GCCAGCGCGCGCCCCCAGCCTCCGGGGACGGCTTCGAGCCGCAGATGGTGAAGTCGCCCAGCTTCGGTGG
CGCCAGCGAGGCCTCGGCCAGGACACCGCCCCAGGTCGTGCAGCCCAGCCCCAGCCTCAGCACGTTCTTC
GGAGACACGGCCGCCAGCCACTCCTTGGCCTCGGACTTCTTCGACTCCTTTACTACCTCCGCCTTCATTT
CCGTCAGCAATCCCGGCGCGGGCTCCCCGGCCCCCGCCAGCCCGCCTCCCCTCGCTGTGCCCGGGACCGA
GGGGCGCCCCGAACCCGTGGCCATGCGAGGGCCCCAGGCAGCTGCGCCCCCGGCGTCGCCAGAGCCTTTC
GCGCACATCCAGGCAGTGTTTGCAGGGAGTGACGACCCCTTTGCCACCGCCCTGAGCATGAGCGAGATGG
ACCGGAGGAACGACGCCTGGCTTCCCGGCGAGGCTACGCGTGGAGTCCTGCGGGCCGTGGCCACCCAGCA
GCGCGGCGCCGTGTTCGTGGACAAGGAGAACCTCACCATGCCGGGCCTCAGGTTCGACAACATCCAGGGA
GATGCAGTTAAAGACTTGATGCTTCGCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTAAATG
CCGACTCAGTGGAACAATCTTTTGTTGGATTGAAACAGCTAATCAGCTGCAGAAACTGGAGGGCAGCAGT
GGACCTGTGCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCTCACCAGCCAC
ACGACAGATTCACTGCAGCTCTGGTTTGTCAGGCTGGCACTACTAGTGAAGTTGGGCCTTTTCCAGAATG
CTGAGATGGAATTTGAACCCTTCGGAAATCTTGATCAGCCAGATCTTTATTACGAGTACTACCCGCACGT
GTACCCTGGGCGCAGGGGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTAC
CTGGGGAACCCACAGGAGTCGCTGGATAGACTGCACAAGGTGAAGACTGTCTGCAGCAAGATCCTGGCCA
ATTTGGAGCAAGGCTTAGCAGAAGACGGCGGCATGAGCAGCGTGACTCAGGAGGGCAGACAAGCCTCTAT
CCGGCTGTGGAGGTCACGTCTGGGCCGGGTGATGTACTCCATGGCAAACTGTCTGCTCCTGATGAAGGAT
TATGTGCTGGCCGTGGAGGCGTATCATTCGGTTATCAAGTATTACCCAGAGCAAGAGCCCCAGCTGCTCA
GCGGCATCGGCCGGATTTCCCTGCAGATTGGAGACATAAAAACAGCTGAAAAGTATTTTCAAGACGTTGA
GAAAGTAACACAGAAATTAGATGGACTACAGGGTAAAATCATGGTTTTGATGAACAGCGCGTTCCTTCAC
CTCGGGCAGAATAACTTTGCAGAAGCCCACAGGTTCTTCACAGAGATCTTAAGGATGGATCCAAGAAACG
CAGTGGCCAACAACAACGCTGCCGTGTGTCTGCTCTACCTGGGCAAGCTCAAGGACTCCCTGCGGCAGCT
GGAGGCCATGGTCCAGCAGGACCCCAGGCACTACCTGCACGAGAGCGTGCTCTTCAACCTGACCACCATG
TACGAGCTGGAGTCCTCACGGAGCATGCAGAAGAAACAGGCCCTGCTGGAGGCTGTCGCCGGCAAGGAGG
GGGACAGCTTCAACACACAGTGCCTCAAGCTGGCCTAG

Translation (735 aa):
MEDAGGGEETPAPEAPHPPQLAPPEEQGLLFQEETIDLGGDEFGSEENETASEGSSPLADKLNEHMMESV
LISDSPNSEGDAGDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVP
GSEAARPEQEPPVAEPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPSLSTFF
GDTAASHSLASDFFDSFTTSAFISVSNPGAGSPAPASPPPLAVPGTEGRPEPVAMRGPQAAAPPASPEPF
AHIQAVFAGSDDPFATALSMSEMDRRNDAWLPGEATRGVLRAVATQQRGAVFVDKENLTMPGLRFDNIQG
DAVKDLMLRFLGEKAAAKRQVLNADSVEQSFVGLKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSH
TTDSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQY
LGNPQESLDRLHKVKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKD
YVLAVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH
LGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVLFNLTTM
YELESSRSMQKKQALLEAVAGKEGDSFNTQCLKLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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